BEAST Output Files on CIPRES

[Shohini S]

Hello,

I don't know why, but when I have tried (at least six or seven times) to run BEAST with my .xml file (BEAST 1.8.0, 1.8.1, and 2.1.3) and with or without BEAGLE, CIPRES does not output a .trees file (I have even re-made .xml files).

Any possible solutions? Anybody with similar problems?

Apologies if this is really basic, I'm just a high school student trying to do a project.

[Miller, Mark]

Hi,

Thanks for reporting that. Usually when this happens and the problem isn't beagle/beast interaction, the job has reached the end of it's max configured wall time, or there is an issue in finding a starting model that does not have zero probability. If it's the former, the file schedulrr_stderr.txt. Will have a message about exceeding max wall time. In the latter case, there will be a message on the .log file about at rescaling. If you can't figure it out, send me the contents of the file jobinfo.txt. I'll help as soon as I can

Mark

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[Shohini S]

Thank you so much for responding so quickly!

I've attached the jobinfo.txt file. the schedulrr_stderr.txt file says

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     3    0     3    0     0      9      0 --:--:-- --:--:-- --:--:--   333
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     3    0     3    0     0      9      0 --:--:-- --:--:-- --:--:--   200
kill -89700: No such process

which doesn't seem to be talking about max configured wall time. The .log file is empty.

Thank you so much!

[Shohini S]