#beastError# A fatal error has been detected by the Java Runtime Environment
1,590 views
Skip to first unread message
任洪广
Dec 18, 2014, 3:44:10 AM12/18/14
to beast...@googlegroups.com
Hi all,
I have encountered the following errors while using beast to run a discrete phylogeographic analysis.
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x4f88cb8d, pid=3764, tid=2484
#
# JRE version: Java(TM) SE Runtime Environment (7.0_45-b18) (build 1.7.0_45-b18)
# Java VM: Java HotSpot(TM) Client VM (24.45-b08 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x4ab5b800): JavaThread "pool-1-thread-1" [_thread_in_native, id=2484, stack(0x50500000,0x50550000)]
siginfo: ExceptionCode=0xc0000005, reading address 0xffffffff
Registers:
EAX=0x00000080, EBX=0x5054f530, ECX=0x00000080, EDX=0x52d9db88
ESP=0x5054f370, EBP=0x5054f520, ESI=0x4eea1f38, EDI=0x00000000
EIP=0x4f88cb8d, EFLAGS=0x00010212
Top of Stack: (sp=0x5054f370)
0x5054f370: 52d9db88 00219778 5054f3d4 fffa1518
0x5054f380: 548f01c0 00000000 00219778 548eff18
0x5054f390: 22324778 3feffffd 27000000 3e96ee6e
0x5054f3a0: 61d00000 3ea6ee6d 27000000 3e96ee6e
0x5054f3b0: 26b00000 3e96ee6e 22324778 3feffffd
0x5054f3c0: 26b00000 3e96ee6e 61800000 3ea6ee6d
0x5054f3d0: 61d00000 3ea6ee6d 27000000 3e96ee6e
0x5054f3e0: 22324778 3feffffd 27000000 3e96ee6e
Does anyone know how to deal with this?
BTW, I am using a windows 7 version OS and java version 1.8 up.
Many thanks.
- Ren
I have encountered the following errors while using beast to run a discrete phylogeographic analysis.
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x4f88cb8d, pid=3764, tid=2484
#
# JRE version: Java(TM) SE Runtime Environment (7.0_45-b18) (build 1.7.0_45-b18)
# Java VM: Java HotSpot(TM) Client VM (24.45-b08 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x4ab5b800): JavaThread "pool-1-thread-1" [_thread_in_native, id=2484, stack(0x50500000,0x50550000)]
siginfo: ExceptionCode=0xc0000005, reading address 0xffffffff
Registers:
EAX=0x00000080, EBX=0x5054f530, ECX=0x00000080, EDX=0x52d9db88
ESP=0x5054f370, EBP=0x5054f520, ESI=0x4eea1f38, EDI=0x00000000
EIP=0x4f88cb8d, EFLAGS=0x00010212
Top of Stack: (sp=0x5054f370)
0x5054f370: 52d9db88 00219778 5054f3d4 fffa1518
0x5054f380: 548f01c0 00000000 00219778 548eff18
0x5054f390: 22324778 3feffffd 27000000 3e96ee6e
0x5054f3a0: 61d00000 3ea6ee6d 27000000 3e96ee6e
0x5054f3b0: 26b00000 3e96ee6e 22324778 3feffffd
0x5054f3c0: 26b00000 3e96ee6e 61800000 3ea6ee6d
0x5054f3d0: 61d00000 3ea6ee6d 27000000 3e96ee6e
0x5054f3e0: 22324778 3feffffd 27000000 3e96ee6e
Does anyone know how to deal with this?
BTW, I am using a windows 7 version OS and java version 1.8 up.
Many thanks.
- Ren
Andrew Rambaut
Dec 18, 2014, 3:51:47 AM12/18/14
to beast...@googlegroups.com
I am not a Windows expert but this looks like it might be a 64-bit/32-bit issue. The BEAGLE version you have installed
looks like it is 32-bit. Is your Windows install a 64-bit version?
Also the error message says you are running a beta version of Java 1.7 (build 1.7.0_45-b18) - you should probably update this.
Andrew
--
You received this message because you are subscribed to the Google Groups "beast-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to beast-users...@googlegroups.com.
To post to this group, send email to beast...@googlegroups.com.
Visit this group at http://groups.google.com/group/beast-users.
For more options, visit https://groups.google.com/d/optout.
Andrew Rambaut
Institute for Evolutionary Biology | Centre for Infection, Immunity & Evolution
Ashworth Laboratories, University of Edinburgh, Edinburgh, EH9 3FL, UK
contact – a.ra...@ed.ac.uk | http://tree.bio.ed.ac.uk | tel +44 131 6508624
alicia alvarez
Dec 23, 2015, 12:59:10 PM12/23/15
to beast-users
Hello
I take this old message to ask for help regarding the same problem.
I tried tu run BEAST 2.3.1 in windows 7 and I had this error message:
I take this old message to ask for help regarding the same problem.
I tried tu run BEAST 2.3.1 in windows 7 and I had this error message:
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x4613cb8d, pid=5068, tid=2232
#
# JRE version: Java(TM) SE Runtime Environment (8.0_66-b18) (build 1.8.0_66-b18)
# Java VM: Java HotSpot(TM) Client VM (25.66-b18 mixed mode windows-x86 )
#
# JRE version: Java(TM) SE Runtime Environment (8.0_66-b18) (build 1.8.0_66-b18)
# Java VM: Java HotSpot(TM) Client VM (25.66-b18 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x0033c400): JavaThread "main" [_thread_in_native, id=2232, stack(0x00a40000,0x00a90000)]
siginfo: ExceptionCode=0xc0000005, reading address 0x00000000
Registers:
EAX=0x00000000, EBX=0x00a8f730, ECX=0x00000000, EDX=0x4d6e0448
ESP=0x00a8f570, EBP=0x00a8f720, ESI=0x4f123660, EDI=0x00000000
EIP=0x4613cb8d, EFLAGS=0x00010246
Top of Stack: (sp=0x00a8f570)
0x00a8f570: 4d6e0448 4744a2a8 ffffffff f833b940
0x00a8f580: 4f051f48 00000000 4744a2a8 4e773e70
0x00a8f590: ffffffff 3fefffff 00000000 00000000
0x00a8f5a0: 00000000 00000000 00000000 00000000
0x00a8f5b0: 00000000 00000000 00000000 3ff00000
0x00a8f5c0: 00000000 3cd00000 00000000 00000000
0x00a8f5d0: 00000000 3cd00000 00000000 3cd00000
0x00a8f5e0: 00000000 3ff00000 00000000 00000000
Instructions: (pc=0x4613cb8d)
0x4613cb6d: 00 00 00 8b 04 30 8b 0e c1 e0 05 c1 e1 05 66 0f
0x4613cb7d: 28 84 05 30 ff ff ff 66 0f 59 84 0d 70 fe ff ff
0x4613cb8d: 66 0f 29 02 66 0f 28 84 05 40 ff ff ff 66 0f 59
0x4613cb9d: 84 0d 80 fe ff ff 8b 85 68 fe ff ff 66 0f 29 42
Register to memory mapping:
EAX=0x00000000 is an unknown value
EBX=0x00a8f730 is pointing into the stack for thread: 0x0033c400
ECX=0x00000000 is an unknown value
EDX=0x4d6e0448 is an unknown value
ESP=0x00a8f570 is pointing into the stack for thread: 0x0033c400
EBP=0x00a8f720 is pointing into the stack for thread: 0x0033c400
ESI=0x4f123660 is an unknown value
EDI=0x00000000 is an unknown value
Stack: [0x00a40000,0x00a90000], sp=0x00a8f570, free space=317k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
C [hmsbeagle-cpu-sse32-21.DLL+0x114d9]
C [hmsbeagle-jni.dll+0x693e]
C [hmsbeagle-jni.dll+0x7679]
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+85
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+2198
j beast.app.beastapp.BeastLauncher.main([Ljava/lang/String;)V+12
v ~StubRoutines::call_stub
V [jvm.dll+0x158ba5]
V [jvm.dll+0x21e12e]
V [jvm.dll+0x158c3e]
V [jvm.dll+0xdae57]
V [jvm.dll+0xe33ef]
C [javaw.exe+0x229a]
C [javaw.exe+0xaebf]
C [javaw.exe+0xaf49]
C [kernel32.dll+0x133ca]
C [ntdll.dll+0x39ed2]
C [ntdll.dll+0x39ea5]
C 0x00000000
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+85
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+2198
j beast.app.beastapp.BeastLauncher.main([Ljava/lang/String;)V+12
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x481cc400 JavaThread "Swing-Shell" daemon [_thread_blocked, id=3984, stack(0x46550000,0x465a0000)]
0x45b10400 JavaThread "TimerQueue" daemon [_thread_blocked, id=4820, stack(0x464f0000,0x46540000)]
0x45a87000 JavaThread "Thread-3" [_thread_blocked, id=872, stack(0x465a0000,0x465f0000)]
0x45a84c00 JavaThread "Thread-2" [_thread_blocked, id=5040, stack(0x464a0000,0x464f0000)]
0x45a66400 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=4412, stack(0x46720000,0x46770000)]
0x458f5c00 JavaThread "AWT-Windows" daemon [_thread_in_native, id=4048, stack(0x009f0000,0x00a40000)]
0x458f4c00 JavaThread "AWT-Shutdown" [_thread_blocked, id=4980, stack(0x45c90000,0x45ce0000)]
0x458f2000 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=3752, stack(0x45dd0000,0x45e20000)]
0x452b7400 JavaThread "Service Thread" daemon [_thread_blocked, id=516, stack(0x00b60000,0x00bb0000)]
0x452b0000 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=1848, stack(0x454b0000,0x45500000)]
0x452af000 JavaThread "Attach Listener" daemon [_thread_blocked, id=2320, stack(0x45520000,0x45570000)]
0x0056d400 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=1576, stack(0x451d0000,0x45220000)]
0x0055f400 JavaThread "Finalizer" daemon [_thread_blocked, id=4308, stack(0x450a0000,0x450f0000)]
0x0055a400 JavaThread "Reference Handler" daemon [_thread_blocked, id=4104, stack(0x048a0000,0x048f0000)]
=>0x0033c400 JavaThread "main" [_thread_in_native, id=2232, stack(0x00a40000,0x00a90000)]
Other Threads:
0x00554800 VMThread [stack: 0x048f0000,0x04940000] [id=1032]
0x452ea000 WatcherThread [stack: 0x45740000,0x45790000] [id=4556]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap:
def new generation total 78656K, used 49576K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 58% used [0x04a00000, 0x071ea040, 0x08e50000)
from space 8704K, 100% used [0x096d0000, 0x09f50000, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 18343K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 10% used [0x19f50000, 0x1b139ea0, 0x1b13a000, 0x24a00000)
Metaspace used 10291K, capacity 10499K, committed 10624K, reserved 10624K
Card table byte_map: [0x44a00000,0x44c10000] byte_map_base: 0x449db000
Polling page: 0x00170000
CodeCache: size=32768Kb used=2974Kb max_used=2974Kb free=29793Kb
bounds [0x02870000, 0x02b58000, 0x04870000]
total_blobs=1680 nmethods=1439 adapters=170
compilation: enabled
Compilation events (10 events):
Event: 18.269 Thread 0x452b0000 nmethod 1447 0x02b45888 code [0x02b459e0, 0x02b45e1c]
Event: 18.269 Thread 0x452b0000 1448 ! org.apache.commons.math.distribution.NormalDistributionImpl::cumulativeProbability (71 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1448 0x02b46188 code [0x02b462e0, 0x02b4649c]
Event: 18.269 Thread 0x452b0000 1449 org.apache.commons.math.special.Erf::erf (27 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1449 0x02b46548 code [0x02b46660, 0x02b4672c]
Event: 18.269 Thread 0x452b0000 1450 java.lang.Math::max (45 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1450 0x02b46788 code [0x02b46880, 0x02b46990]
Event: 18.269 Thread 0x452b0000 1451 org.apache.commons.math.analysis.solvers.BrentSolver::solve (491 bytes)
Event: 18.270 Thread 0x452b0000 nmethod 1451 0x02b469c8 code [0x02b46bf0, 0x02b47234]
Event: 18.270 Thread 0x452b0000 1452 beast.evolution.substitutionmodel.DefaultEigenSystem::hqr2 (3912 bytes)
GC Heap History (6 events):
Event: 16.371 GC heap before
{Heap before GC invocations=0 (full 0):
def new generation total 78656K, used 69952K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9335K, capacity 9511K, committed 9600K, reserved 9600K
Event: 16.400 GC heap after
Heap after GC invocations=1 (full 0):
def new generation total 78656K, used 4912K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 56% used [0x096d0000, 0x09b9c0e8, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9335K, capacity 9511K, committed 9600K, reserved 9600K
}
Event: 16.841 GC heap before
{Heap before GC invocations=1 (full 0):
def new generation total 78656K, used 74864K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 56% used [0x096d0000, 0x09b9c0e8, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9795K, capacity 10006K, committed 10112K, reserved 10624K
Event: 16.853 GC heap after
Heap after GC invocations=2 (full 0):
def new generation total 78656K, used 7405K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 85% used [0x08e50000, 0x0958b500, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 4302K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 2% used [0x19f50000, 0x1a383838, 0x1a383a00, 0x24a00000)
Metaspace used 9795K, capacity 10006K, committed 10112K, reserved 10624K
}
Event: 17.042 GC heap before
{Heap before GC invocations=2 (full 0):
def new generation total 78656K, used 77357K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 85% used [0x08e50000, 0x0958b500, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 4302K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 2% used [0x19f50000, 0x1a383838, 0x1a383a00, 0x24a00000)
Metaspace used 9984K, capacity 10169K, committed 10368K, reserved 10624K
Event: 17.055 GC heap after
Heap after GC invocations=3 (full 0):
def new generation total 78656K, used 8704K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 100% used [0x096d0000, 0x09f50000, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 18343K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 10% used [0x19f50000, 0x1b139ea0, 0x1b13a000, 0x24a00000)
Metaspace used 9984K, capacity 10169K, committed 10368K, reserved 10624K
}
Deoptimization events (0 events):
No events
Internal exceptions (10 events):
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d99628) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d998a0) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d99ae8) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84b00) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84d48) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84fc0) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85208) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85480) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e856f8) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85940) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Events (10 events):
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactory
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactory done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactoryImpl
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactoryImpl done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolver
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolver done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/BrentSolver
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/BrentSolver done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl done
Dynamic libraries:
0x00da0000 - 0x00dd3000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\javaw.exe
0x77750000 - 0x778d0000 C:\Windows\SysWOW64\ntdll.dll
0x764f0000 - 0x76600000 C:\Windows\syswow64\kernel32.dll
0x76690000 - 0x766d6000 C:\Windows\syswow64\KERNELBASE.dll
0x76f80000 - 0x77020000 C:\Windows\syswow64\ADVAPI32.dll
0x767e0000 - 0x7688c000 C:\Windows\syswow64\msvcrt.dll
0x75830000 - 0x75849000 C:\Windows\SysWOW64\sechost.dll
0x76df0000 - 0x76ee0000 C:\Windows\syswow64\RPCRT4.dll
0x752b0000 - 0x75310000 C:\Windows\syswow64\SspiCli.dll
0x752a0000 - 0x752ac000 C:\Windows\syswow64\CRYPTBASE.dll
0x766e0000 - 0x767e0000 C:\Windows\syswow64\USER32.dll
0x75560000 - 0x755f0000 C:\Windows\syswow64\GDI32.dll
0x77720000 - 0x7772a000 C:\Windows\syswow64\LPK.dll
0x76ee0000 - 0x76f7d000 C:\Windows\syswow64\USP10.dll
0x73690000 - 0x7382e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.17514_none_41e6975e2bd6f2b2\COMCTL32.dll
0x77020000 - 0x77077000 C:\Windows\syswow64\SHLWAPI.dll
0x76890000 - 0x768f0000 C:\Windows\system32\IMM32.DLL
0x76bd0000 - 0x76c9c000 C:\Windows\syswow64\MSCTF.dll
0x5cb20000 - 0x5cbdf000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\msvcr100.dll
0x59fa0000 - 0x5a365000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\client\jvm.dll
0x73520000 - 0x73527000 C:\Windows\system32\WSOCK32.dll
0x75850000 - 0x75885000 C:\Windows\syswow64\WS2_32.dll
0x76de0000 - 0x76de6000 C:\Windows\syswow64\NSI.dll
0x73070000 - 0x730a2000 C:\Windows\system32\WINMM.dll
0x751d0000 - 0x751d9000 C:\Windows\system32\VERSION.dll
0x75890000 - 0x75895000 C:\Windows\syswow64\PSAPI.DLL
0x72ee0000 - 0x72eec000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\verify.dll
0x72de0000 - 0x72e01000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\java.dll
0x72e20000 - 0x72e33000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\zip.dll
0x758a0000 - 0x764ea000 C:\Windows\syswow64\SHELL32.dll
0x76a70000 - 0x76bcc000 C:\Windows\syswow64\ole32.dll
0x745d0000 - 0x745db000 C:\Windows\system32\profapi.dll
0x5c400000 - 0x5c545000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\awt.dll
0x76cd0000 - 0x76d5f000 C:\Windows\syswow64\OLEAUT32.dll
0x73610000 - 0x73690000 C:\Windows\system32\uxtheme.dll
0x73350000 - 0x73363000 C:\Windows\system32\dwmapi.dll
0x5d640000 - 0x5d679000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\fontmanager.dll
0x754d0000 - 0x75553000 C:\Windows\syswow64\CLBCatQ.DLL
0x72990000 - 0x72a8b000 C:\Windows\system32\WindowsCodecs.dll
0x73ea0000 - 0x73eec000 C:\Windows\system32\apphelp.dll
0x6e890000 - 0x6e8c1000 C:\Windows\system32\EhStorShell.dll
0x771b0000 - 0x7734d000 C:\Windows\syswow64\SETUPAPI.dll
0x77180000 - 0x771a7000 C:\Windows\syswow64\CFGMGR32.dll
0x76dc0000 - 0x76dd2000 C:\Windows\syswow64\DEVOBJ.dll
0x70d70000 - 0x70e65000 C:\Windows\system32\PROPSYS.dll
0x6e070000 - 0x6e47b000 C:\PROGRA~2\MICROS~1\Office14\GROOVEEX.DLL
0x6e7e0000 - 0x6e883000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCR90.dll
0x6e750000 - 0x6e7de000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCP90.dll
0x6e8e0000 - 0x6e90b000 C:\Windows\WinSxS\x86_microsoft.vc90.atl_1fc8b3b9a1e18e3b_9.0.30729.4148_none_51ca66a2bbe76806\ATL90.DLL
0x6dc60000 - 0x6e06f000 C:\PROGRA~2\COMMON~1\MICROS~1\OFFICE14\Cultures\office.odf
0x6d3e0000 - 0x6dc5e000 C:\PROGRA~2\MICROS~1\Office14\3082\GrooveIntlResource.dll
0x6ea70000 - 0x6eae0000 C:\Windows\system32\ntshrui.dll
0x733a0000 - 0x733b9000 C:\Windows\system32\srvcli.dll
0x72c40000 - 0x72c4b000 C:\Windows\system32\cscapi.dll
0x6ea60000 - 0x6ea6a000 C:\Windows\system32\slc.dll
0x72d20000 - 0x72d36000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\net.dll
0x72850000 - 0x7288c000 C:\Windows\system32\mswsock.dll
0x72bd0000 - 0x72bd6000 C:\Windows\System32\wship6.dll
0x72e10000 - 0x72e1f000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\nio.dll
0x5d880000 - 0x5d8b0000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\t2k.dll
0x727c0000 - 0x72844000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_5.82.7601.17514_none_ec83dffa859149af\comctl32.dll
0x75140000 - 0x75161000 C:\Windows\system32\ntmarta.dll
0x76a20000 - 0x76a65000 C:\Windows\syswow64\WLDAP32.dll
0x53f30000 - 0x540c8000 C:\Windows\system32\NetworkExplorer.dll
0x59270000 - 0x5929e000 C:\Windows\System32\shdocvw.dll
0x73e30000 - 0x73e42000 C:\Windows\system32\MPR.dll
0x5d5d0000 - 0x5d5d8000 C:\Windows\System32\drprov.dll
0x6e940000 - 0x6e969000 C:\Windows\System32\WINSTA.dll
0x59250000 - 0x59264000 C:\Windows\System32\ntlanman.dll
0x540e0000 - 0x540f7000 C:\Windows\System32\davclnt.dll
0x5c0a0000 - 0x5c0a8000 C:\Windows\System32\DAVHLPR.dll
0x73390000 - 0x7339f000 C:\Windows\system32\wkscli.dll
0x73510000 - 0x73519000 C:\Windows\system32\netutils.dll
0x5a790000 - 0x5a9c8000 C:\Windows\system32\wpdshext.dll
0x70ed0000 - 0x71060000 C:\Windows\WinSxS\x86_microsoft.windows.gdiplus_6595b64144ccf1df_1.1.7601.17514_none_72d18a4386696c80\gdiplus.dll
0x5c1c0000 - 0x5c249000 C:\Windows\system32\PortableDeviceApi.dll
0x75800000 - 0x7582d000 C:\Windows\syswow64\WINTRUST.dll
0x76900000 - 0x76a1d000 C:\Windows\syswow64\CRYPT32.dll
0x768f0000 - 0x768fc000 C:\Windows\syswow64\MSASN1.dll
0x5c180000 - 0x5c1bf000 C:\Windows\system32\audiodev.dll
0x5be30000 - 0x5c097000 C:\Windows\system32\WMVCore.DLL
0x5d600000 - 0x5d63d000 C:\Windows\system32\WMASF.DLL
0x5caf0000 - 0x5cb12000 C:\Windows\system32\EhStorAPI.dll
0x45ce0000 - 0x45d16000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-jni.dll
0x460f0000 - 0x4612d000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu32-21.DLL
0x490d0000 - 0x4a011000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cuda32-21.DLL
0x597c0000 - 0x59f95000 C:\Windows\system32\nvcuda.dll
0x59530000 - 0x597b9000 C:\Windows\system32\nvapi.dll
0x4a220000 - 0x4a78e000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-opencl32-21.DLL
0x5d5e0000 - 0x5d5f4000 C:\Windows\system32\OpenCL.dll
0x5c140000 - 0x5c174000 C:\Windows\system32\IntelOpenCL32.dll
0x5a6c0000 - 0x5a781000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\intelocl32.dll
0x5c0e0000 - 0x5c13b000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\task_executor32.dll
0x5bd60000 - 0x5be28000 C:\Windows\system32\OPENGL32.dll
0x5c3d0000 - 0x5c3f2000 C:\Windows\system32\GLU32.dll
0x579e0000 - 0x57ac7000 C:\Windows\system32\DDRAW.dll
0x5e450000 - 0x5e456000 C:\Windows\system32\DCIMAN32.dll
0x5a650000 - 0x5a6bd000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\cpu_device32.dll
0x57980000 - 0x579d5000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\tbb\tbb.dll
0x577f0000 - 0x5797b000 C:\Windows\system32\igdrcl32.dll
0x566b0000 - 0x577ec000 C:\Windows\system32\igdfcl32.dll
0x6cb20000 - 0x6cc0b000 C:\Windows\system32\dbghelp.dll
0x5a600000 - 0x5a64c000 C:\Windows\system32\igdbcl32.dll
0x6ee90000 - 0x6f200000 C:\Windows\system32\igdusc32.dll
0x46130000 - 0x4616c000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu-sse32-21.DLL
VM Arguments:
jvm_args: -Xms256m -Xmx1024m
java_command: beast.app.beastapp.BeastLauncher -window -working -options
java_class_path (initial): D:\trabajos\FILOGENIA CAVIOMORFOS - con Leti\intento DICIEMBRE 2015 mas especies\beast archivos usados y resultados\BEAST.v2.3.1.Windows\BEAST\BEAST.exe;.\lib\launcher.jar
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=C:\Program Files (x86)\Common Files\libhmsbeagle\;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Common Files\Intel\Shared Files\cpp\bin\Intel64;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Skype\Phone\;C:\Program Files (x86)\Java\jre1.8.0_66\bin
USERNAME=INTEL
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 60 Stepping 3, GenuineIntel
--------------- S Y S T E M ---------------
OS: Windows 7 , 64 bit Build 7601 (6.1.7601.17514)
CPU:total 8 (4 cores per cpu, 2 threads per core) family 6 model 60 stepping 3, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, aes, clmul, erms, rtm, lzcnt, ht, tsc, tscinvbit, bmi1, bmi2
Memory: 4k page, physical 8054576k(5073468k free), swap 16107308k(12381688k free)
vm_info: Java HotSpot(TM) Client VM (25.66-b18) for windows-x86 JRE (1.8.0_66-b18), built on Nov 9 2015 10:58:29 by "java_re" with MS VC++ 10.0 (VS2010)
time: Wed Dec 23 14:54:47 2015
elapsed time: 18 seconds (0d 0h 0m 18s)
My windows is 64 bits and the BEAGLE I have installed is 32 bit if I understand right.
How can I fix this?
Thanks,
Alicia
siginfo: ExceptionCode=0xc0000005, reading address 0x00000000
Registers:
EAX=0x00000000, EBX=0x00a8f730, ECX=0x00000000, EDX=0x4d6e0448
ESP=0x00a8f570, EBP=0x00a8f720, ESI=0x4f123660, EDI=0x00000000
EIP=0x4613cb8d, EFLAGS=0x00010246
Top of Stack: (sp=0x00a8f570)
0x00a8f570: 4d6e0448 4744a2a8 ffffffff f833b940
0x00a8f580: 4f051f48 00000000 4744a2a8 4e773e70
0x00a8f590: ffffffff 3fefffff 00000000 00000000
0x00a8f5a0: 00000000 00000000 00000000 00000000
0x00a8f5b0: 00000000 00000000 00000000 3ff00000
0x00a8f5c0: 00000000 3cd00000 00000000 00000000
0x00a8f5d0: 00000000 3cd00000 00000000 3cd00000
0x00a8f5e0: 00000000 3ff00000 00000000 00000000
Instructions: (pc=0x4613cb8d)
0x4613cb6d: 00 00 00 8b 04 30 8b 0e c1 e0 05 c1 e1 05 66 0f
0x4613cb7d: 28 84 05 30 ff ff ff 66 0f 59 84 0d 70 fe ff ff
0x4613cb8d: 66 0f 29 02 66 0f 28 84 05 40 ff ff ff 66 0f 59
0x4613cb9d: 84 0d 80 fe ff ff 8b 85 68 fe ff ff 66 0f 29 42
Register to memory mapping:
EAX=0x00000000 is an unknown value
EBX=0x00a8f730 is pointing into the stack for thread: 0x0033c400
ECX=0x00000000 is an unknown value
EDX=0x4d6e0448 is an unknown value
ESP=0x00a8f570 is pointing into the stack for thread: 0x0033c400
EBP=0x00a8f720 is pointing into the stack for thread: 0x0033c400
ESI=0x4f123660 is an unknown value
EDI=0x00000000 is an unknown value
Stack: [0x00a40000,0x00a90000], sp=0x00a8f570, free space=317k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
C [hmsbeagle-cpu-sse32-21.DLL+0x114d9]
C [hmsbeagle-jni.dll+0x693e]
C [hmsbeagle-jni.dll+0x7679]
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+85
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+2198
j beast.app.beastapp.BeastLauncher.main([Ljava/lang/String;)V+12
v ~StubRoutines::call_stub
V [jvm.dll+0x158ba5]
V [jvm.dll+0x21e12e]
V [jvm.dll+0x158c3e]
V [jvm.dll+0xdae57]
V [jvm.dll+0xe33ef]
C [javaw.exe+0x229a]
C [javaw.exe+0xaebf]
C [javaw.exe+0xaf49]
C [kernel32.dll+0x133ca]
C [ntdll.dll+0x39ed2]
C [ntdll.dll+0x39ea5]
C 0x00000000
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+85
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+2198
j beast.app.beastapp.BeastLauncher.main([Ljava/lang/String;)V+12
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x481cc400 JavaThread "Swing-Shell" daemon [_thread_blocked, id=3984, stack(0x46550000,0x465a0000)]
0x45b10400 JavaThread "TimerQueue" daemon [_thread_blocked, id=4820, stack(0x464f0000,0x46540000)]
0x45a87000 JavaThread "Thread-3" [_thread_blocked, id=872, stack(0x465a0000,0x465f0000)]
0x45a84c00 JavaThread "Thread-2" [_thread_blocked, id=5040, stack(0x464a0000,0x464f0000)]
0x45a66400 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=4412, stack(0x46720000,0x46770000)]
0x458f5c00 JavaThread "AWT-Windows" daemon [_thread_in_native, id=4048, stack(0x009f0000,0x00a40000)]
0x458f4c00 JavaThread "AWT-Shutdown" [_thread_blocked, id=4980, stack(0x45c90000,0x45ce0000)]
0x458f2000 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=3752, stack(0x45dd0000,0x45e20000)]
0x452b7400 JavaThread "Service Thread" daemon [_thread_blocked, id=516, stack(0x00b60000,0x00bb0000)]
0x452b0000 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=1848, stack(0x454b0000,0x45500000)]
0x452af000 JavaThread "Attach Listener" daemon [_thread_blocked, id=2320, stack(0x45520000,0x45570000)]
0x0056d400 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=1576, stack(0x451d0000,0x45220000)]
0x0055f400 JavaThread "Finalizer" daemon [_thread_blocked, id=4308, stack(0x450a0000,0x450f0000)]
0x0055a400 JavaThread "Reference Handler" daemon [_thread_blocked, id=4104, stack(0x048a0000,0x048f0000)]
=>0x0033c400 JavaThread "main" [_thread_in_native, id=2232, stack(0x00a40000,0x00a90000)]
Other Threads:
0x00554800 VMThread [stack: 0x048f0000,0x04940000] [id=1032]
0x452ea000 WatcherThread [stack: 0x45740000,0x45790000] [id=4556]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap:
def new generation total 78656K, used 49576K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 58% used [0x04a00000, 0x071ea040, 0x08e50000)
from space 8704K, 100% used [0x096d0000, 0x09f50000, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 18343K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 10% used [0x19f50000, 0x1b139ea0, 0x1b13a000, 0x24a00000)
Metaspace used 10291K, capacity 10499K, committed 10624K, reserved 10624K
Card table byte_map: [0x44a00000,0x44c10000] byte_map_base: 0x449db000
Polling page: 0x00170000
CodeCache: size=32768Kb used=2974Kb max_used=2974Kb free=29793Kb
bounds [0x02870000, 0x02b58000, 0x04870000]
total_blobs=1680 nmethods=1439 adapters=170
compilation: enabled
Compilation events (10 events):
Event: 18.269 Thread 0x452b0000 nmethod 1447 0x02b45888 code [0x02b459e0, 0x02b45e1c]
Event: 18.269 Thread 0x452b0000 1448 ! org.apache.commons.math.distribution.NormalDistributionImpl::cumulativeProbability (71 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1448 0x02b46188 code [0x02b462e0, 0x02b4649c]
Event: 18.269 Thread 0x452b0000 1449 org.apache.commons.math.special.Erf::erf (27 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1449 0x02b46548 code [0x02b46660, 0x02b4672c]
Event: 18.269 Thread 0x452b0000 1450 java.lang.Math::max (45 bytes)
Event: 18.269 Thread 0x452b0000 nmethod 1450 0x02b46788 code [0x02b46880, 0x02b46990]
Event: 18.269 Thread 0x452b0000 1451 org.apache.commons.math.analysis.solvers.BrentSolver::solve (491 bytes)
Event: 18.270 Thread 0x452b0000 nmethod 1451 0x02b469c8 code [0x02b46bf0, 0x02b47234]
Event: 18.270 Thread 0x452b0000 1452 beast.evolution.substitutionmodel.DefaultEigenSystem::hqr2 (3912 bytes)
GC Heap History (6 events):
Event: 16.371 GC heap before
{Heap before GC invocations=0 (full 0):
def new generation total 78656K, used 69952K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9335K, capacity 9511K, committed 9600K, reserved 9600K
Event: 16.400 GC heap after
Heap after GC invocations=1 (full 0):
def new generation total 78656K, used 4912K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 56% used [0x096d0000, 0x09b9c0e8, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9335K, capacity 9511K, committed 9600K, reserved 9600K
}
Event: 16.841 GC heap before
{Heap before GC invocations=1 (full 0):
def new generation total 78656K, used 74864K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 56% used [0x096d0000, 0x09b9c0e8, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 0K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 0% used [0x19f50000, 0x19f50000, 0x19f50200, 0x24a00000)
Metaspace used 9795K, capacity 10006K, committed 10112K, reserved 10624K
Event: 16.853 GC heap after
Heap after GC invocations=2 (full 0):
def new generation total 78656K, used 7405K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 85% used [0x08e50000, 0x0958b500, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 4302K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 2% used [0x19f50000, 0x1a383838, 0x1a383a00, 0x24a00000)
Metaspace used 9795K, capacity 10006K, committed 10112K, reserved 10624K
}
Event: 17.042 GC heap before
{Heap before GC invocations=2 (full 0):
def new generation total 78656K, used 77357K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 100% used [0x04a00000, 0x08e50000, 0x08e50000)
from space 8704K, 85% used [0x08e50000, 0x0958b500, 0x096d0000)
to space 8704K, 0% used [0x096d0000, 0x096d0000, 0x09f50000)
tenured generation total 174784K, used 4302K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 2% used [0x19f50000, 0x1a383838, 0x1a383a00, 0x24a00000)
Metaspace used 9984K, capacity 10169K, committed 10368K, reserved 10624K
Event: 17.055 GC heap after
Heap after GC invocations=3 (full 0):
def new generation total 78656K, used 8704K [0x04a00000, 0x09f50000, 0x19f50000)
eden space 69952K, 0% used [0x04a00000, 0x04a00000, 0x08e50000)
from space 8704K, 100% used [0x096d0000, 0x09f50000, 0x09f50000)
to space 8704K, 0% used [0x08e50000, 0x08e50000, 0x096d0000)
tenured generation total 174784K, used 18343K [0x19f50000, 0x24a00000, 0x44a00000)
the space 174784K, 10% used [0x19f50000, 0x1b139ea0, 0x1b13a000, 0x24a00000)
Metaspace used 9984K, capacity 10169K, committed 10368K, reserved 10624K
}
Deoptimization events (0 events):
No events
Internal exceptions (10 events):
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d99628) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d998a0) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.228 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06d99ae8) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84b00) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84d48) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e84fc0) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85208) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85480) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e856f8) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 18.244 Thread 0x0033c400 Exception <a 'java/io/IOException'> (0x06e85940) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u66\5298\hotspot\src\share\vm\prims\jni.cpp, line 709]
Events (10 events):
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactory
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactory done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactoryImpl
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverFactoryImpl done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolver
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolver done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/BrentSolver
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/BrentSolver done
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl
Event: 18.265 loading class org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl done
Dynamic libraries:
0x00da0000 - 0x00dd3000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\javaw.exe
0x77750000 - 0x778d0000 C:\Windows\SysWOW64\ntdll.dll
0x764f0000 - 0x76600000 C:\Windows\syswow64\kernel32.dll
0x76690000 - 0x766d6000 C:\Windows\syswow64\KERNELBASE.dll
0x76f80000 - 0x77020000 C:\Windows\syswow64\ADVAPI32.dll
0x767e0000 - 0x7688c000 C:\Windows\syswow64\msvcrt.dll
0x75830000 - 0x75849000 C:\Windows\SysWOW64\sechost.dll
0x76df0000 - 0x76ee0000 C:\Windows\syswow64\RPCRT4.dll
0x752b0000 - 0x75310000 C:\Windows\syswow64\SspiCli.dll
0x752a0000 - 0x752ac000 C:\Windows\syswow64\CRYPTBASE.dll
0x766e0000 - 0x767e0000 C:\Windows\syswow64\USER32.dll
0x75560000 - 0x755f0000 C:\Windows\syswow64\GDI32.dll
0x77720000 - 0x7772a000 C:\Windows\syswow64\LPK.dll
0x76ee0000 - 0x76f7d000 C:\Windows\syswow64\USP10.dll
0x73690000 - 0x7382e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.17514_none_41e6975e2bd6f2b2\COMCTL32.dll
0x77020000 - 0x77077000 C:\Windows\syswow64\SHLWAPI.dll
0x76890000 - 0x768f0000 C:\Windows\system32\IMM32.DLL
0x76bd0000 - 0x76c9c000 C:\Windows\syswow64\MSCTF.dll
0x5cb20000 - 0x5cbdf000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\msvcr100.dll
0x59fa0000 - 0x5a365000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\client\jvm.dll
0x73520000 - 0x73527000 C:\Windows\system32\WSOCK32.dll
0x75850000 - 0x75885000 C:\Windows\syswow64\WS2_32.dll
0x76de0000 - 0x76de6000 C:\Windows\syswow64\NSI.dll
0x73070000 - 0x730a2000 C:\Windows\system32\WINMM.dll
0x751d0000 - 0x751d9000 C:\Windows\system32\VERSION.dll
0x75890000 - 0x75895000 C:\Windows\syswow64\PSAPI.DLL
0x72ee0000 - 0x72eec000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\verify.dll
0x72de0000 - 0x72e01000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\java.dll
0x72e20000 - 0x72e33000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\zip.dll
0x758a0000 - 0x764ea000 C:\Windows\syswow64\SHELL32.dll
0x76a70000 - 0x76bcc000 C:\Windows\syswow64\ole32.dll
0x745d0000 - 0x745db000 C:\Windows\system32\profapi.dll
0x5c400000 - 0x5c545000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\awt.dll
0x76cd0000 - 0x76d5f000 C:\Windows\syswow64\OLEAUT32.dll
0x73610000 - 0x73690000 C:\Windows\system32\uxtheme.dll
0x73350000 - 0x73363000 C:\Windows\system32\dwmapi.dll
0x5d640000 - 0x5d679000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\fontmanager.dll
0x754d0000 - 0x75553000 C:\Windows\syswow64\CLBCatQ.DLL
0x72990000 - 0x72a8b000 C:\Windows\system32\WindowsCodecs.dll
0x73ea0000 - 0x73eec000 C:\Windows\system32\apphelp.dll
0x6e890000 - 0x6e8c1000 C:\Windows\system32\EhStorShell.dll
0x771b0000 - 0x7734d000 C:\Windows\syswow64\SETUPAPI.dll
0x77180000 - 0x771a7000 C:\Windows\syswow64\CFGMGR32.dll
0x76dc0000 - 0x76dd2000 C:\Windows\syswow64\DEVOBJ.dll
0x70d70000 - 0x70e65000 C:\Windows\system32\PROPSYS.dll
0x6e070000 - 0x6e47b000 C:\PROGRA~2\MICROS~1\Office14\GROOVEEX.DLL
0x6e7e0000 - 0x6e883000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCR90.dll
0x6e750000 - 0x6e7de000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCP90.dll
0x6e8e0000 - 0x6e90b000 C:\Windows\WinSxS\x86_microsoft.vc90.atl_1fc8b3b9a1e18e3b_9.0.30729.4148_none_51ca66a2bbe76806\ATL90.DLL
0x6dc60000 - 0x6e06f000 C:\PROGRA~2\COMMON~1\MICROS~1\OFFICE14\Cultures\office.odf
0x6d3e0000 - 0x6dc5e000 C:\PROGRA~2\MICROS~1\Office14\3082\GrooveIntlResource.dll
0x6ea70000 - 0x6eae0000 C:\Windows\system32\ntshrui.dll
0x733a0000 - 0x733b9000 C:\Windows\system32\srvcli.dll
0x72c40000 - 0x72c4b000 C:\Windows\system32\cscapi.dll
0x6ea60000 - 0x6ea6a000 C:\Windows\system32\slc.dll
0x72d20000 - 0x72d36000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\net.dll
0x72850000 - 0x7288c000 C:\Windows\system32\mswsock.dll
0x72bd0000 - 0x72bd6000 C:\Windows\System32\wship6.dll
0x72e10000 - 0x72e1f000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\nio.dll
0x5d880000 - 0x5d8b0000 C:\Program Files (x86)\Java\jre1.8.0_66\bin\t2k.dll
0x727c0000 - 0x72844000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_5.82.7601.17514_none_ec83dffa859149af\comctl32.dll
0x75140000 - 0x75161000 C:\Windows\system32\ntmarta.dll
0x76a20000 - 0x76a65000 C:\Windows\syswow64\WLDAP32.dll
0x53f30000 - 0x540c8000 C:\Windows\system32\NetworkExplorer.dll
0x59270000 - 0x5929e000 C:\Windows\System32\shdocvw.dll
0x73e30000 - 0x73e42000 C:\Windows\system32\MPR.dll
0x5d5d0000 - 0x5d5d8000 C:\Windows\System32\drprov.dll
0x6e940000 - 0x6e969000 C:\Windows\System32\WINSTA.dll
0x59250000 - 0x59264000 C:\Windows\System32\ntlanman.dll
0x540e0000 - 0x540f7000 C:\Windows\System32\davclnt.dll
0x5c0a0000 - 0x5c0a8000 C:\Windows\System32\DAVHLPR.dll
0x73390000 - 0x7339f000 C:\Windows\system32\wkscli.dll
0x73510000 - 0x73519000 C:\Windows\system32\netutils.dll
0x5a790000 - 0x5a9c8000 C:\Windows\system32\wpdshext.dll
0x70ed0000 - 0x71060000 C:\Windows\WinSxS\x86_microsoft.windows.gdiplus_6595b64144ccf1df_1.1.7601.17514_none_72d18a4386696c80\gdiplus.dll
0x5c1c0000 - 0x5c249000 C:\Windows\system32\PortableDeviceApi.dll
0x75800000 - 0x7582d000 C:\Windows\syswow64\WINTRUST.dll
0x76900000 - 0x76a1d000 C:\Windows\syswow64\CRYPT32.dll
0x768f0000 - 0x768fc000 C:\Windows\syswow64\MSASN1.dll
0x5c180000 - 0x5c1bf000 C:\Windows\system32\audiodev.dll
0x5be30000 - 0x5c097000 C:\Windows\system32\WMVCore.DLL
0x5d600000 - 0x5d63d000 C:\Windows\system32\WMASF.DLL
0x5caf0000 - 0x5cb12000 C:\Windows\system32\EhStorAPI.dll
0x45ce0000 - 0x45d16000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-jni.dll
0x460f0000 - 0x4612d000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu32-21.DLL
0x490d0000 - 0x4a011000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cuda32-21.DLL
0x597c0000 - 0x59f95000 C:\Windows\system32\nvcuda.dll
0x59530000 - 0x597b9000 C:\Windows\system32\nvapi.dll
0x4a220000 - 0x4a78e000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-opencl32-21.DLL
0x5d5e0000 - 0x5d5f4000 C:\Windows\system32\OpenCL.dll
0x5c140000 - 0x5c174000 C:\Windows\system32\IntelOpenCL32.dll
0x5a6c0000 - 0x5a781000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\intelocl32.dll
0x5c0e0000 - 0x5c13b000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\task_executor32.dll
0x5bd60000 - 0x5be28000 C:\Windows\system32\OPENGL32.dll
0x5c3d0000 - 0x5c3f2000 C:\Windows\system32\GLU32.dll
0x579e0000 - 0x57ac7000 C:\Windows\system32\DDRAW.dll
0x5e450000 - 0x5e456000 C:\Windows\system32\DCIMAN32.dll
0x5a650000 - 0x5a6bd000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\cpu_device32.dll
0x57980000 - 0x579d5000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\tbb\tbb.dll
0x577f0000 - 0x5797b000 C:\Windows\system32\igdrcl32.dll
0x566b0000 - 0x577ec000 C:\Windows\system32\igdfcl32.dll
0x6cb20000 - 0x6cc0b000 C:\Windows\system32\dbghelp.dll
0x5a600000 - 0x5a64c000 C:\Windows\system32\igdbcl32.dll
0x6ee90000 - 0x6f200000 C:\Windows\system32\igdusc32.dll
0x46130000 - 0x4616c000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu-sse32-21.DLL
VM Arguments:
jvm_args: -Xms256m -Xmx1024m
java_command: beast.app.beastapp.BeastLauncher -window -working -options
java_class_path (initial): D:\trabajos\FILOGENIA CAVIOMORFOS - con Leti\intento DICIEMBRE 2015 mas especies\beast archivos usados y resultados\BEAST.v2.3.1.Windows\BEAST\BEAST.exe;.\lib\launcher.jar
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=C:\Program Files (x86)\Common Files\libhmsbeagle\;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Common Files\Intel\Shared Files\cpp\bin\Intel64;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Skype\Phone\;C:\Program Files (x86)\Java\jre1.8.0_66\bin
USERNAME=INTEL
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 60 Stepping 3, GenuineIntel
--------------- S Y S T E M ---------------
OS: Windows 7 , 64 bit Build 7601 (6.1.7601.17514)
CPU:total 8 (4 cores per cpu, 2 threads per core) family 6 model 60 stepping 3, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, aes, clmul, erms, rtm, lzcnt, ht, tsc, tscinvbit, bmi1, bmi2
Memory: 4k page, physical 8054576k(5073468k free), swap 16107308k(12381688k free)
vm_info: Java HotSpot(TM) Client VM (25.66-b18) for windows-x86 JRE (1.8.0_66-b18), built on Nov 9 2015 10:58:29 by "java_re" with MS VC++ 10.0 (VS2010)
time: Wed Dec 23 14:54:47 2015
elapsed time: 18 seconds (0d 0h 0m 18s)
My windows is 64 bits and the BEAGLE I have installed is 32 bit if I understand right.
How can I fix this?
Thanks,
Alicia
nabilabidbe...@gmail.com
Mar 13, 2016, 3:51:50 AM3/13/16
to beast-users
hi everybody
If you want to run your BEAST work w/o any errors on windows 7 32-bit , you find your Beagle files (C:\Program Files\Common Files\libhmsbeagle) and you delete all files but you keep only three files (hmsbeagle32.dll, hmsbeagle-cpu32-21.dll, and hmsbeagle-opencl32-21.dll).
Now you run your beast work and it should work. Good luck guys :)
University of Florida
Marco group
Emergent Pathogen Institute
Emergent Pathogen Institute
Nabil
nabilabidbe...@gmail.com
Mar 13, 2016, 3:51:50 AM3/13/16
to beast-users
Hi everybody
i joined the group today so i didn't see your questions before.
in bref, if you want to run your work on windows 32 without any errors you have to find you Beagle files (C:\Program Files\Common Files\libhmsbeagle) and you delete all files there and you keep only three file ( hmsbeagle32.dll, hmsbeagle-cpu32-21.dll, hmsbeagle-opencl32-21.dll). Your run again your BEAST and it should work now without any problems.
Good luck
On Thursday, December 18, 2014 at 3:44:10 AM UTC-5, Hongguang Ren wrote:
Edwin Njoto
Apr 26, 2017, 1:46:26 AM4/26/17
to beast-users
Hi. I have encountered the same problem
I have used BEAST for 3 months before the error message as below.
I am not sure how to install beagle 64 bit since it is not stated which bit (https://faculty.washington.edu/browning/beagle/beagle.html#download)
I use the latest Java available and Windows 7 64 bit
Looking forward for any suggestion for solution.
Best regard
Edwin
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x47f1cb8d, pid=6728, tid=0x00002500
#
# JRE version: Java(TM) SE Runtime Environment (8.0_131-b11) (build 1.8.0_131-b11)
# Java VM: Java HotSpot(TM) Client VM (25.131-b11 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x4dc67400): JavaThread "pool-1-thread-1" [_thread_in_native, id=9472, stack(0x4b5f0000,0x4b640000)]
siginfo: ExceptionCode=0xc0000005, reading address 0x00000000
Registers:
EAX=0x00000080, EBX=0x4b63f5a0, ECX=0x00000080, EDX=0x4bb5f938
ESP=0x4b63f3e0, EBP=0x4b63f590, ESI=0x4eaa26d0, EDI=0x00000000
EIP=0x47f1cb8d, EFLAGS=0x00010202
Top of Stack: (sp=0x4b63f3e0)
0x4b63f3e0: 4bb5f938 002de588 ffffffff fffffc30
0x4b63f3f0: 4ea839b8 00000000 002de588 4ea83710
0x4b63f400: 23dbba79 3fecd9dc 0c1eb328 3fa55357
0x4b63f410: 330cc838 3fb453bc 0c1eb328 3fa55357
0x4b63f420: 09e5bf78 3f95d42e 962081b6 3fec2148
0x4b63f430: 09e5bf78 3f95d42e bdcea290 3fa4e6e1
0x4b63f440: 7ce090c0 3fa92a44 601a3618 3f9a66b5
0x4b63f450: e5482a7e 3febe208 601a3618 3f9a66b5
Instructions: (pc=0x47f1cb8d)
0x47f1cb6d: 00 00 00 8b 04 30 8b 0e c1 e0 05 c1 e1 05 66 0f
0x47f1cb7d: 28 84 05 30 ff ff ff 66 0f 59 84 0d 70 fe ff ff
0x47f1cb8d: 66 0f 29 02 66 0f 28 84 05 40 ff ff ff 66 0f 59
0x47f1cb9d: 84 0d 80 fe ff ff 8b 85 68 fe ff ff 66 0f 29 42
Register to memory mapping:
EAX=0x00000080 is an unknown value
EBX=0x4b63f5a0 is pointing into the stack for thread: 0x4dc67400
ECX=0x00000080 is an unknown value
EDX=0x4bb5f938 is an unknown value
ESP=0x4b63f3e0 is pointing into the stack for thread: 0x4dc67400
EBP=0x4b63f590 is pointing into the stack for thread: 0x4dc67400
ESI=0x4eaa26d0 is an unknown value
EDI=0x00000000 is an unknown value
Stack: [0x4b5f0000,0x4b640000], sp=0x4b63f3e0, free space=316k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
C [hmsbeagle-cpu-sse32-21.DLL+0x114d9]
C [hmsbeagle32.dll+0x693e]
C [hmsbeagle32.dll+0x7679]
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j dr.app.beagle.evomodel.treelikelihood.BeagleTreeLikelihood.calculateLogLikelihood()D+466
j dr.app.beagle.evomodel.treelikelihood.AbstractTreeLikelihood.getLogLikelihood()D+9
j dr.inference.model.CompoundLikelihood$LikelihoodCaller.call()Ljava/lang/Double;+8
j dr.inference.model.CompoundLikelihood$LikelihoodCaller.call()Ljava/lang/Object;+1
j java.util.concurrent.FutureTask.run()V+42
j java.util.concurrent.ThreadPoolExecutor.runWorker(Ljava/util/concurrent/ThreadPoolExecutor$Worker;)V+95
j java.util.concurrent.ThreadPoolExecutor$Worker.run()V+5
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub
V [jvm.dll+0x15af45]
V [jvm.dll+0x2213ae]
V [jvm.dll+0x15afde]
V [jvm.dll+0x15b166]
V [jvm.dll+0x15b1d7]
V [jvm.dll+0xff36f]
V [jvm.dll+0x17dc30]
V [jvm.dll+0x17e4aa]
V [jvm.dll+0x1c2ec6]
C [msvcr100.dll+0x5c556]
C [msvcr100.dll+0x5c600]
C [kernel32.dll+0x1336a]
C [ntdll.dll+0x39902]
C [ntdll.dll+0x398d5]
C 0x00000000
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j dr.app.beagle.evomodel.treelikelihood.BeagleTreeLikelihood.calculateLogLikelihood()D+466
j dr.app.beagle.evomodel.treelikelihood.AbstractTreeLikelihood.getLogLikelihood()D+9
j dr.inference.model.CompoundLikelihood$LikelihoodCaller.call()Ljava/lang/Double;+8
j dr.inference.model.CompoundLikelihood$LikelihoodCaller.call()Ljava/lang/Object;+1
j java.util.concurrent.FutureTask.run()V+42
j java.util.concurrent.ThreadPoolExecutor.runWorker(Ljava/util/concurrent/ThreadPoolExecutor$Worker;)V+95
j java.util.concurrent.ThreadPoolExecutor$Worker.run()V+5
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x4dd01000 JavaThread "pool-1-thread-2" [_thread_blocked, id=7652, stack(0x4b6a0000,0x4b6f0000)]
=>0x4dc67400 JavaThread "pool-1-thread-1" [_thread_in_native, id=9472, stack(0x4b5f0000,0x4b640000)]
0x460c5000 JavaThread "TimerQueue" daemon [_thread_blocked, id=12000, stack(0x48ae0000,0x48b30000)]
0x46085c00 JavaThread "D3D Screen Updater" daemon [_thread_blocked, id=10100, stack(0x48a90000,0x48ae0000)]
0x4608ac00 JavaThread "Thread-3" [_thread_blocked, id=2964, stack(0x48b30000,0x48b80000)]
0x4608a400 JavaThread "Thread-2" [_thread_blocked, id=2120, stack(0x48660000,0x486b0000)]
0x45feb000 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=1788, stack(0x46380000,0x463d0000)]
0x4519ac00 JavaThread "AWT-Windows" daemon [_thread_in_native, id=11568, stack(0x45c80000,0x45cd0000)]
0x4519a400 JavaThread "AWT-Shutdown" [_thread_blocked, id=11848, stack(0x45bf0000,0x45c40000)]
0x45197c00 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=9076, stack(0x45640000,0x45690000)]
0x4504b400 JavaThread "Service Thread" daemon [_thread_blocked, id=11748, stack(0x45960000,0x459b0000)]
0x45029800 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=9592, stack(0x45800000,0x45850000)]
0x45028c00 JavaThread "Attach Listener" daemon [_thread_blocked, id=5832, stack(0x45760000,0x457b0000)]
0x45022000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=12072, stack(0x452e0000,0x45330000)]
0x45017400 JavaThread "Finalizer" daemon [_thread_blocked, id=12140, stack(0x45270000,0x452c0000)]
0x44ff0c00 JavaThread "Reference Handler" daemon [_thread_blocked, id=1960, stack(0x453f0000,0x45440000)]
0x00e3c400 JavaThread "main" [_thread_blocked, id=9412, stack(0x00e70000,0x00ec0000)]
Other Threads:
0x44fea000 VMThread [stack: 0x451d0000,0x45220000] [id=2084]
0x45056400 WatcherThread [stack: 0x45a40000,0x45a90000] [id=10700]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap:
def new generation total 78720K, used 36063K [0x04800000, 0x09d60000, 0x19d50000)
eden space 70016K, 51% used [0x04800000, 0x06b37fe8, 0x08c60000)
from space 8704K, 0% used [0x08c60000, 0x08c60000, 0x094e0000)
to space 8704K, 0% used [0x094e0000, 0x094e0000, 0x09d60000)
tenured generation total 174784K, used 9282K [0x19d50000, 0x24800000, 0x44800000)
the space 174784K, 5% used [0x19d50000, 0x1a660bd8, 0x1a660c00, 0x24800000)
Metaspace used 13318K, capacity 13499K, committed 13696K, reserved 13696K
Card table byte_map: [0x44800000,0x44a10000] byte_map_base: 0x447dc000
Polling page: 0x00cb0000
CodeCache: size=32768Kb used=2474Kb max_used=2474Kb free=30293Kb
bounds [0x02780000, 0x029f0000, 0x04780000]
total_blobs=1453 nmethods=1165 adapters=218
compilation: enabled
Compilation events (10 events):
Event: 29.303 Thread 0x45029800 1169 javax.swing.text.GapContent$MarkVector::elementAt (43 bytes)
Event: 29.303 Thread 0x45029800 nmethod 1169 0x029e5f08 code [0x029e6010, 0x029e6110]
Event: 29.303 Thread 0x45029800 1170 cern.colt.matrix.impl.DenseDoubleMatrix1D::assign (194 bytes)
Event: 29.304 Thread 0x45029800 nmethod 1170 0x029e6288 code [0x029e6400, 0x029e6894]
Event: 29.304 Thread 0x45029800 1171 % dr.app.beagle.evomodel.substmodel.ComplexSubstitutionModel::getTransitionProbabilities @ 346 (413 bytes)
Event: 29.305 Thread 0x45029800 nmethod 1171% 0x029e6e48 code [0x029e7000, 0x029e7c98]
Event: 29.305 Thread 0x45029800 1172 javax.swing.text.PlainView::paint (455 bytes)
Event: 29.307 Thread 0x45029800 nmethod 1172 0x029e8ec8 code [0x029e9100, 0x029e9944]
Event: 29.307 Thread 0x45029800 1173 dr.util.ComparableDouble::compareTo (35 bytes)
Event: 29.307 Thread 0x45029800 nmethod 1173 0x029ea848 code [0x029ea940, 0x029eaa30]
GC Heap History (2 events):
Event: 25.531 GC heap before
{Heap before GC invocations=0 (full 0):
def new generation total 78656K, used 51787K [0x04800000, 0x09d50000, 0x19d50000)
eden space 69952K, 74% used [0x04800000, 0x07a92e48, 0x08c50000)
from space 8704K, 0% used [0x08c50000, 0x08c50000, 0x094d0000)
to space 8704K, 0% used [0x094d0000, 0x094d0000, 0x09d50000)
tenured generation total 174784K, used 0K [0x19d50000, 0x24800000, 0x44800000)
the space 174784K, 0% used [0x19d50000, 0x19d50000, 0x19d50200, 0x24800000)
Metaspace used 12009K, capacity 12185K, committed 12288K, reserved 12672K
Event: 25.584 GC heap after
Heap after GC invocations=1 (full 1):
def new generation total 78720K, used 0K [0x04800000, 0x09d60000, 0x19d50000)
eden space 70016K, 0% used [0x04800000, 0x04800000, 0x08c60000)
from space 8704K, 0% used [0x08c60000, 0x08c60000, 0x094e0000)
to space 8704K, 0% used [0x094e0000, 0x094e0000, 0x09d60000)
tenured generation total 174784K, used 9282K [0x19d50000, 0x24800000, 0x44800000)
the space 174784K, 5% used [0x19d50000, 0x1a660bd8, 0x1a660c00, 0x24800000)
Metaspace used 12009K, capacity 12185K, committed 12288K, reserved 12672K
}
Deoptimization events (0 events):
No events
Internal exceptions (10 events):
Event: 0.024 Thread 0x00e3c400 Exception <a 'java/lang/NoSuchMethodError': Method sun.misc.Unsafe.defineClass(Ljava/lang/String;[BII)Ljava/lang/Class; name or signature does not match> (0x04806e98) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share
Event: 0.024 Thread 0x00e3c400 Exception <a 'java/lang/NoSuchMethodError': Method sun.misc.Unsafe.prefetchRead(Ljava/lang/Object;J)V name or signature does not match> (0x04807168) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jni.cpp,
Event: 0.165 Thread 0x00e3c400 Exception <a 'java/security/PrivilegedActionException'> (0x048fa950) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jvm.cpp, line 1390]
Event: 0.165 Thread 0x00e3c400 Exception <a 'java/security/PrivilegedActionException'> (0x048fab50) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jvm.cpp, line 1390]
Event: 0.166 Thread 0x00e3c400 Exception <a 'java/security/PrivilegedActionException'> (0x048fe988) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jvm.cpp, line 1390]
Event: 0.166 Thread 0x00e3c400 Exception <a 'java/security/PrivilegedActionException'> (0x048feb88) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jvm.cpp, line 1390]
Event: 0.170 Thread 0x00e3c400 Exception <a 'java/io/FileNotFoundException'> (0x04903218) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 0.191 Thread 0x00e3c400 Exception <a 'java/lang/NoSuchFieldError': method resolution failed> (0x04b1b6e8) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\methodHandles.cpp, line 1146]
Event: 0.192 Thread 0x00e3c400 Exception <a 'java/lang/NoSuchFieldError': method resolution failed> (0x04b27888) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\methodHandles.cpp, line 1146]
Event: 0.251 Thread 0x00e3c400 Exception <a 'java/io/FileNotFoundException'> (0x04ef1938) thrown at [C:\re\workspace\8-2-build-windows-i586-cygwin\jdk8u131\8869\hotspot\src\share\vm\prims\jni.cpp, line 709]
Events (10 events):
Event: 29.308 Executing VM operation: RevokeBias
Event: 29.308 Executing VM operation: RevokeBias done
Event: 29.309 Executing VM operation: RevokeBias
Event: 29.309 Executing VM operation: RevokeBias done
Event: 29.309 Executing VM operation: RevokeBias
Event: 29.309 Executing VM operation: RevokeBias done
Event: 29.309 loading class dr/app/beagle/evomodel/branchmodel/BranchModel$1
Event: 29.309 loading class dr/app/beagle/evomodel/branchmodel/BranchModel$1 done
Event: 29.309 Executing VM operation: RevokeBias
Event: 29.309 Executing VM operation: RevokeBias done
Dynamic libraries:
0x01330000 - 0x01363000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\javaw.exe
0x77010000 - 0x77190000 C:\Windows\SysWOW64\ntdll.dll
0x764c0000 - 0x765d0000 C:\Windows\syswow64\kernel32.dll
0x76860000 - 0x768a7000 C:\Windows\syswow64\KERNELBASE.dll
0x643a0000 - 0x6462e000 C:\ProgramData\Symantec\Symantec Endpoint Protection\14.0.1904.0000.105\Data\Definitions\IPSDefs\20170424.021\IPSEng32.dll
0x76ac0000 - 0x76b61000 C:\Windows\syswow64\ADVAPI32.dll
0x760e0000 - 0x7618c000 C:\Windows\syswow64\msvcrt.dll
0x74f60000 - 0x74f79000 C:\Windows\SysWOW64\sechost.dll
0x74dc0000 - 0x74eb0000 C:\Windows\syswow64\RPCRT4.dll
0x748b0000 - 0x74910000 C:\Windows\syswow64\SspiCli.dll
0x748a0000 - 0x748ac000 C:\Windows\syswow64\CRYPTBASE.dll
0x74940000 - 0x74a40000 C:\Windows\syswow64\USER32.dll
0x74d30000 - 0x74dc0000 C:\Windows\syswow64\GDI32.dll
0x75170000 - 0x7517a000 C:\Windows\syswow64\LPK.dll
0x76650000 - 0x766ed000 C:\Windows\syswow64\USP10.dll
0x710c0000 - 0x7125e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.18837_none_41e855142bd5705d\COMCTL32.dll
0x76080000 - 0x760d7000 C:\Windows\syswow64\SHLWAPI.dll
0x76440000 - 0x764a0000 C:\Windows\system32\IMM32.DLL
0x766f0000 - 0x767bd000 C:\Windows\syswow64\MSCTF.dll
0x66bf0000 - 0x66caf000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\msvcr100.dll
0x5def0000 - 0x5e2be000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\client\jvm.dll
0x71f40000 - 0x71f47000 C:\Windows\system32\WSOCK32.dll
0x767c0000 - 0x767f5000 C:\Windows\syswow64\WS2_32.dll
0x76fe0000 - 0x76fe6000 C:\Windows\syswow64\NSI.dll
0x73430000 - 0x73462000 C:\Windows\system32\WINMM.dll
0x73690000 - 0x73699000 C:\Windows\system32\VERSION.dll
0x74bf0000 - 0x74bf5000 C:\Windows\syswow64\PSAPI.DLL
0x6b6f0000 - 0x6b6fc000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\verify.dll
0x69cd0000 - 0x69cf1000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\java.dll
0x69950000 - 0x69963000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\zip.dll
0x75430000 - 0x7607c000 C:\Windows\syswow64\SHELL32.dll
0x768d0000 - 0x76a2d000 C:\Windows\syswow64\ole32.dll
0x76840000 - 0x7684b000 C:\Windows\syswow64\profapi.dll
0x5e540000 - 0x5e685000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\awt.dll
0x76b70000 - 0x76c01000 C:\Windows\syswow64\OLEAUT32.dll
0x71420000 - 0x714a0000 C:\Windows\system32\uxtheme.dll
0x713b0000 - 0x713c3000 C:\Windows\system32\dwmapi.dll
0x67140000 - 0x67208000 C:\Windows\system32\opengl32.dll
0x69920000 - 0x69942000 C:\Windows\system32\GLU32.dll
0x63f70000 - 0x64057000 C:\Windows\system32\DDRAW.dll
0x6fe50000 - 0x6fe56000 C:\Windows\system32\DCIMAN32.dll
0x74fd0000 - 0x7516d000 C:\Windows\syswow64\SETUPAPI.dll
0x74f90000 - 0x74fb7000 C:\Windows\syswow64\CFGMGR32.dll
0x768b0000 - 0x768c2000 C:\Windows\syswow64\DEVOBJ.dll
0x620c0000 - 0x62283000 C:\Windows\system32\d3d9.dll
0x69690000 - 0x69696000 C:\Windows\system32\d3d8thk.dll
0x518d0000 - 0x5273b000 C:\Windows\system32\nvd3dum.dll
0x715a0000 - 0x715c5000 C:\Windows\system32\powrprof.dll
0x698e0000 - 0x69919000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\fontmanager.dll
0x74ed0000 - 0x74f53000 C:\Windows\syswow64\CLBCatQ.DLL
0x683e0000 - 0x68511000 C:\Windows\system32\WindowsCodecs.dll
0x715d0000 - 0x7161c000 C:\Windows\system32\apphelp.dll
0x70550000 - 0x70581000 C:\Windows\system32\EhStorShell.dll
0x6a360000 - 0x6a455000 C:\Windows\system32\PROPSYS.dll
0x62f40000 - 0x62fb0000 C:\Windows\system32\ntshrui.dll
0x71320000 - 0x71339000 C:\Windows\system32\srvcli.dll
0x70b90000 - 0x70b9b000 C:\Windows\system32\cscapi.dll
0x69780000 - 0x6978a000 C:\Windows\system32\slc.dll
0x67120000 - 0x67136000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\net.dll
0x71ef0000 - 0x71f2c000 C:\Windows\system32\mswsock.dll
0x707b0000 - 0x707b6000 C:\Windows\System32\wship6.dll
0x6ae20000 - 0x6ae2f000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\nio.dll
0x670e0000 - 0x67112000 C:\Program Files (x86)\Java\jre1.8.0_131\bin\t2k.dll
0x765d0000 - 0x7664b000 C:\Windows\syswow64\COMDLG32.dll
0x63f10000 - 0x63f68000 C:\Program Files (x86)\Common Files\microsoft shared\ink\tiptsf.dll
0x71090000 - 0x710b1000 C:\Windows\system32\ntmarta.dll
0x74a40000 - 0x74a85000 C:\Windows\syswow64\WLDAP32.dll
0x70fc0000 - 0x70fd7000 C:\Windows\system32\CRYPTSP.dll
0x70f80000 - 0x70fbb000 C:\Windows\system32\rsaenh.dll
0x70f70000 - 0x70f7e000 C:\Windows\system32\RpcRtRemote.dll
0x6fe60000 - 0x6febc000 C:\Windows\System32\StructuredQuery.dll
0x712b0000 - 0x712b8000 C:\Windows\System32\Secur32.dll
0x69790000 - 0x697de000 C:\Windows\SysWOW64\actxprxy.dll
0x69880000 - 0x698ca000 C:\Program Files (x86)\Internet Explorer\ieproxy.dll
0x76430000 - 0x76434000 C:\Windows\syswow64\api-ms-win-downlevel-shlwapi-l1-1-0.dll
0x6f6c0000 - 0x6f6c4000 C:\Windows\system32\api-ms-win-downlevel-shlwapi-l2-1-0.dll
0x764b0000 - 0x764b5000 C:\Windows\syswow64\api-ms-win-downlevel-advapi32-l1-1-0.dll
0x67c40000 - 0x67c56000 C:\Windows\SysWOW64\thumbcache.dll
0x6fd70000 - 0x6fd9f000 C:\Windows\system32\SHDOCVW.dll
0x63000000 - 0x63d0b000 C:\Windows\system32\ieframe.DLL
0x74f80000 - 0x74f84000 C:\Windows\syswow64\api-ms-win-downlevel-user32-l1-1-0.dll
0x70710000 - 0x70714000 C:\Windows\system32\api-ms-win-downlevel-shell32-l1-1-0.dll
0x76850000 - 0x76854000 C:\Windows\syswow64\api-ms-win-downlevel-version-l1-1-0.dll
0x74fc0000 - 0x74fc3000 C:\Windows\syswow64\api-ms-win-downlevel-normaliz-l1-1-0.dll
0x76800000 - 0x76803000 C:\Windows\syswow64\normaliz.DLL
0x76190000 - 0x763c4000 C:\Windows\syswow64\iertutil.dll
0x63e70000 - 0x63f10000 C:\Windows\system32\SearchFolder.dll
0x71340000 - 0x71349000 C:\Windows\system32\netutils.dll
0x69a30000 - 0x69a3e000 C:\Program Files (x86)\Common Files\Microsoft Shared\OFFICE14\MSOXEV.DLL
0x737e0000 - 0x73883000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.7523_none_508f21ccbcbbb7a8\MSVCR90.dll
0x47bd0000 - 0x47c06000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle32.dll
0x47c10000 - 0x47c4d000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu32-21.DLL
0x4c3a0000 - 0x4d2e1000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cuda32-21.DLL
0x4bba0000 - 0x4c18c000 C:\Windows\system32\nvcuda.dll
0x60530000 - 0x6078c000 C:\Windows\system32\nvapi.dll
0x74910000 - 0x7493f000 C:\Windows\syswow64\WINTRUST.dll
0x74c00000 - 0x74d21000 C:\Windows\syswow64\CRYPT32.dll
0x74be0000 - 0x74bec000 C:\Windows\syswow64\MSASN1.dll
0x4d2f0000 - 0x4d85e000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-opencl32-21.DLL
0x66f00000 - 0x66f14000 C:\Windows\system32\OpenCL.dll
0x66d30000 - 0x66d76000 C:\Windows\system32\IntelOpenCL32.dll
0x61ae0000 - 0x61ba1000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\intelocl32.dll
0x66cd0000 - 0x66d2b000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\task_executor32.dll
0x61180000 - 0x611ed000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\cpu_device32.dll
0x63e10000 - 0x63e65000 C:\Program Files (x86)\Common Files\Intel\OpenCL\bin\x86\tbb\tbb.dll
0x47f10000 - 0x47f4c000 C:\Program Files (x86)\Common Files\libhmsbeagle\hmsbeagle-cpu-sse32-21.DLL
0x67d00000 - 0x67deb000 C:\Windows\system32\dbghelp.dll
VM Arguments:
jvm_args: -Xms256m -Xmx1024m
java_command: C:\Users\z5096787\Desktop\ISER\ISER PROGRAMMES\BEASTv.1.8.4\BEAST.v1.8.4\BEAST v1.8.4\BEAST v1.8.4.exe -window -working -options
java_class_path (initial): C:\Users\z5096787\Desktop\ISER\ISER PROGRAMMES\BEASTv.1.8.4\BEAST.v1.8.4\BEAST v1.8.4\BEAST v1.8.4.exe
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=C:\ProgramData\Oracle\Java\javapath;C:\Perl64\site\bin;C:\Perl64\bin;C:\Program Files (x86)\Common Files\libhmsbeagle\;C:\Program Files\Common Files\Microsoft Shared\Microsoft Online Services;C:\Program Files (x86)\Common Files\Microsoft Shared\Microsoft Online Services;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\Symantec\Workspace Virtualization\;c:\Program Files (x86)\Microsoft SQL Server\90\Tools\binn\;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Anaconda2;C:\Anaconda2\Scripts;C:\Anaconda2\Library\bin;C:\Program Files\IBM\SPSS\Statistics\24\JRE\bin;C:\Program Files\Java\jre7\bin\server;C:\Program Files (x86)\Java\jre7\bin\client;C:\Program Files\SASHome94\Secure\ccme4;C:\Program Files\SASHome94\x86\Secure\ccme4;C:\Program Files\Microsoft SQL Server\120\Tools\Binn\;C:\Program Files (x86)\Java\jre1.8.0_131\bin
USERNAME=z5096787
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 60 Stepping 3, GenuineIntel
--------------- S Y S T E M ---------------
OS: Windows 7 , 64 bit Build 7601 (6.1.7601.23677)
CPU:total 4 (initial active 4) (4 cores per cpu, 1 threads per core) family 6 model 60 stepping 3, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, aes, clmul, erms, lzcnt, tsc, tscinvbit, bmi1, bmi2
Memory: 4k page, physical 8292716k(3551088k free), swap 16583572k(11065816k free)
vm_info: Java HotSpot(TM) Client VM (25.131-b11) for windows-x86 JRE (1.8.0_131-b11), built on Mar 15 2017 01:26:29 by "java_re" with MS VC++ 10.0 (VS2010)
time: Wed Apr 26 09:51:51 2017
elapsed time: 29 seconds (0d 0h 0m 29s)
Best regard,
Edwin
Reply all
Reply to author
Forward
0 new messages