CMAKE build error: wrong EIGEN3 version

[wuji...@gmail.com]

Hey VOTCA community 

I am new to VOTCA and CMAKE. 

I was trying to install votca. During the build process,  it outputs a cmake error: 

CMake Error at /usr/share/cmake-3.5/Modules/FindPackageHandleStandardArgs.cmake:148 (message):
  Could NOT find EIGEN3: Found unsuitable version "3.2.92", but required is
  at least "3.3.0" (found /usr/include/eigen3)

While my eigen3 version is 3.3~beta1-2, so it gets confused over the EIGEN3 version? 

Would appreciate any help and hint

Thanks

[Christoph Junghans]

A beta is a pre-release version and hence counts as before 3.3.0!

Try to update your version!

Christoph 

Would appreciate any help and hint

Thanks

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Christoph Junghans
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[Wujie Wang]

Many thanks for your prompt reply.

We are using Ubuntu 16.04 and it seems that the base version for EIGEN3 is  3.3~beta1-2, according to http://neuro.debian.net/pkgs/libeigen3-dev.html

I found a similar issue here: https://github.com/OpenNMT/CTranslate/issues/22

I am wondering if there is any hint on upgrading to 3.3 here other than apt-get install? 

Thanks

On Thu, Jul 12, 2018 at 11:11 PM, Christoph Junghans <jung...@votca.org> wrote:

On Thu, Jul 12, 2018 at 21:06 <wuji...@gmail.com> wrote:

Hey VOTCA community 

I am new to VOTCA and CMAKE. 

I was trying to install votca. During the build process,  it outputs a cmake error: 

CMake Error at /usr/share/cmake-3.5/Modules/FindPackageHandleStandardArgs.cmake:148 (message):
  Could NOT find EIGEN3: Found unsuitable version "3.2.92", but required is
  at least "3.3.0" (found /usr/include/eigen3)

While my eigen3 version is 3.3~beta1-2, so it gets confused over the EIGEN3 version? 

A beta is a pre-release version and hence counts as before 3.3.0!

Try to update your version!

Christoph 

Would appreciate any help and hint

Thanks

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[Christoph Junghans]

On Thu, Jul 12, 2018 at 9:11 PM, Christoph Junghans <jung...@votca.org> wrote:
>
>
> On Thu, Jul 12, 2018 at 21:06 <wuji...@gmail.com> wrote:
>>
>> Hey VOTCA community
>>
>> I am new to VOTCA and CMAKE.
>> I was trying to install votca. During the build process, it outputs a
>> cmake error:
>>
>> CMake Error at
>> /usr/share/cmake-3.5/Modules/FindPackageHandleStandardArgs.cmake:148
>> (message):
>> Could NOT find EIGEN3: Found unsuitable version "3.2.92", but required
>> is
>> at least "3.3.0" (found /usr/include/eigen3)
>>
>>
>> While my eigen3 version is 3.3~beta1-2, so it gets confused over the
>> EIGEN3 version?
>
> A beta is a pre-release version and hence counts as before 3.3.0!
>
> Try to update your version!

One more detail, CMake just reads the version from
/usr/include/eigen3/Eigen/src/Core/util/Macros.h, so there is no magic
going on.

We haven't tested VOTCA with Eigen Version less than 3.3, so you might
be in luck and it is still possible.

Christoph

[Christoph Junghans]

On Fri, Jul 13, 2018 at 9:31 AM, Wujie Wang <wuji...@gmail.com> wrote:
> Many thanks for your prompt reply.
>
> We are using Ubuntu 16.04 and it seems that the base version for EIGEN3 is
> 3.3~beta1-2, according to http://neuro.debian.net/pkgs/libeigen3-dev.html
>
> I found a similar issue here:
> https://github.com/OpenNMT/CTranslate/issues/22
>
> I am wondering if there is any hint on upgrading to 3.3 here other than
> apt-get install?

Eigen3 is header-based library, so you can just get the tarball,
unpack it and point CMake to it with
-DEIGEN3_INCLUDE_DIR=/path/to/your/eigen.

Christoph

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>>
>> --
>> Christoph Junghans
>> Web: http://www.compphys.de
>>
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[Joshua Moore]

Hi Christoph,

I am getting these kind of Eigen 3 errors when building on Centos 7.  I have eigen3 installed.  I am attempting to install from the master version files downloaded today via the README.  What am I missing with eigen3?  It seems to detect it.

See below for output

Thanks.

Josh

This is VOTCA's next generation build system.

Usage:

    prefix=WHERE/TO/INSTALL/VOTCA
    version=master # or 'stable' or 'v1.4.1'
    git clone -b ${version} --recursive https://github.com/votca/votca.git
    cd votca
    mkdir build
    cd build
    cmake -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON -DCMAKE_INSTALL_PREFIX=${prefix} ..
    make -j<number of cores>
    make install

[/usr/include/eigen3]$ ls -lrt
total 8
-rw-r--r--. 1 root root  216 Jun 15  2017 signature_of_eigen3_matrix_library
drwxr-xr-x. 3 root root   18 May 26  2018 unsupported
drwxr-xr-x. 3 root root 4096 Oct 29 12:01 Eigen

 cmake3 -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON -DEIGEN3_INCLUDE_DIR=/usr/include/eigen3 -DCMAKE_INSTALL_PREFIX=${prefix} ..

-- Boost version: 1.68.0
-- Found the following Boost libraries:
--   program_options
--   filesystem
--   system
-- 'Intel OpenMP' used for MKL parallelisation
-- Found Eigen3: /usr/share/eigen3
-- Boost version: 1.68.0
-- Found the following Boost libraries:
--   program_options
--   filesystem
--   system
-- Found Eigen3: /usr/share/eigen3
-- Found VOTCA_TOOLS:
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.12") found components:  C
-- Found VOTCA_CSG:
-- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
-- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found suitable version "1.8.12", minimum required is "1.8") found components:  CXX
-- Boost version: 1.68.0
-- Found the following Boost libraries:
--   program_options
--   serialization
--   filesystem
--   system
--   timer
--   chrono
-- Found Eigen3: /usr/share/eigen3
-- Found VOTCA_TOOLS:
-- Found VOTCA_CSG:
-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "7.0.1" (found /bin/clang-format)
-- The following OPTIONAL packages have been found:

 * Git
 * MKL
 * TXT2TAGS
 * UnixCommands
 * OpenMP
 * PkgConfig
 * Doxygen

-- The following REQUIRED packages have been found:

 * FFTW3
 * EXPAT
 * Threads
 * GROMACS (required version >= 20160000)
 * LIBXC
 * HDF5 (required version >= 1.8)
 * Boost (required version >= 1.57.0)
 * Eigen3 (required version >= 3.3.0)

-- The following OPTIONAL packages have not been found:

 * CLANG_FORMAT (required version >= 7.0.1)

-- Configuring done
CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
  Target "votca_tools" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at tools/src/tools/CMakeLists.txt:3 (add_executable):
  Target "votca_property" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
  Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
  Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_resample" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_map" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_density" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_property" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
  Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
  Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the target
  was not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
  Target "template_threaded" links to target "Eigen3::Eigen" but the target
  was not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
  Target "template_serial" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "fluctuations" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "orientcorr" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "sphericalorder" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "part_dist" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "partial_rdf" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "traj_force" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
  Target "radii" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
  Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
  Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
  Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
  Target "votca_tools" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
  Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
  Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_map" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_property" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_resample" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_density" links to target "Eigen3::Eigen" but the target was not
  found.  Perhaps a find_package() call is missing for an IMPORTED target, or
  an ALIAS target is missing?

CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
  Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
  Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
  Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the target
  was not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?

-- Generating done
-- Build files have been written to: /apps/votca/votca/build

>>> email to vo...@googlegroups.com.

>>> To post to this group, send email to vo...@googlegroups.com.
>>> Visit this group at https://groups.google.com/group/votca.
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>>
>> --
>> Christoph Junghans
>> Web: http://www.compphys.de
>>
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[Joshua Moore]

Problem appears to go away when I try the code downloaded as the "stable" version.  I was trying the "master" version previously.  Is the "master" version the development version?

Thanks.

Josh

[Christoph Junghans]

On Tue, Oct 29, 2019 at 10:24 AM Joshua Moore <jdm...@ncsu.edu> wrote:
>
> Hi Christoph,
>
> I am getting these kind of Eigen 3 errors when building on Centos 7. I have eigen3 installed. I am attempting to install from the master version files downloaded today via the README. What am I missing with eigen3? It seems to detect it.

This seems to be a bug in the centos7 package of Eigen3, Eigen itself
needs to be build with cmake3 to export the target we require.
I made a fix here:
https://src.fedoraproject.org/rpms/eigen3/pull-request/2, it will take
a while to go through.

Christoph

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[Christoph Junghans]

On Tue, Oct 29, 2019 at 11:26 AM Joshua Moore <jdm...@ncsu.edu> wrote:
>
> Problem appears to go away when I try the code downloaded as the "stable" version. I was trying the "master" version previously. Is the "master" version the development version?

Yes, master is the development version and stable the last released
version. There are packages for CentOs7 as well:
https://github.com/votca/votca/blob/master/share/doc/INSTALL.md#centos

Christoph

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[Christoph Junghans]

On Wed, Oct 30, 2019 at 05:02 Christoph Junghans <jung...@votca.org> wrote:

On Tue, Oct 29, 2019 at 10:24 AM Joshua Moore <jdm...@ncsu.edu> wrote:
>
> Hi Christoph,
>
> I am getting these kind of Eigen 3 errors when building on Centos 7.  I have eigen3 installed.  I am attempting to install from the master version files downloaded today via the README.  What am I missing with eigen3?  It seems to detect it.

This seems to be a bug in the centos7 package of Eigen3, Eigen itself
needs to be build with cmake3 to export the target we require.
I made a fix here:
https://src.fedoraproject.org/rpms/eigen3/pull-request/2, it will take
a while to go through.

there is an rpm update now: 

https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2019-99ec3bf40f