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On 9 Sep 2020, at 19:20, Bahar Hazal Yalçınkaya <baharhazal...@gmail.com> wrote:
Hi,
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<Screen Shot 2020-09-09 at 20.10.35.png>
Did you check your T1 - DWI registration? What I understand is registration is related to FSL and the pipeline offer some options as below:
Methods for the FLIRT registration options: ["regular"/"boundary"/"pseudo"]; default: "regular"export REGISTRATION="regular"
Did you check the label image step? I am not sure what should I check it uses "desikan" MR brain image labeling
Does your tck2connectome step complain that some regions have no tracks?
No, it did not.
Actually I have 88 regions. I have one region named after "unknown" may it be related?
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