Can't run CLUMPP please help!

[Virginia Moreno]

Hi,

I'm struggling trying to run CLUMPP on my Mac (Mavericks). I'm using the output from Structure Harvester (indfile) and I have checked the formatting of the paramfile. I keep getting the error:

Error: Unable to read value in indfile ''K2.indfile''
Please check the indfile and the value at row 716 and column 1.

Note: this problem could also be caused by giving any of
the parameters R, K and C the wrong number.

There is nothing out of order at row 716 as far as I'm aware. If anyone could please give me a hand I would really appreciate it, attached both files.

Thanks,

Virginia

[Vikram Chhatre]

Virginia -

You set the number of runs to 10, when in fact you have only 5 runs.  Also, you had set the searching method to be '1' (Full search), which can be computationally very intensive.  I would change that to '2'.  See the attached archive.

V

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[Virginia Moreno]

Thanks a lot! And I apologize I should have noticed the mistake.

On Sunday, May 18, 2014 3:25:44 PM UTC+12, Vikram Chhatre wrote:

Virginia -

You set the number of runs to 10, when in fact you have only 5 runs.  Also, you had set the searching method to be '1' (Full search), which can be computationally very intensive.  I would change that to '2'.  See the attached archive.

V

On Sat, May 17, 2014 at 11:05 PM, Virginia Moreno <virgini...@gmail.com> wrote:

Hi,

I'm struggling trying to run CLUMPP on my Mac (Mavericks). I'm using the output from Structure Harvester (indfile) and I have checked the formatting of the paramfile. I keep getting the error:

Error: Unable to read value in indfile ''K2.indfile''
Please check the indfile and the value at row 716 and column 1.

Note: this problem could also be caused by giving any of
the parameters R, K and C the wrong number.

There is nothing out of order at row 716 as far as I'm aware. If anyone could please give me a hand I would really appreciate it, attached both files.

Thanks,

Virginia

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[Kelcie Chiquillo]

Hi Vikram,

I'm also having the same error message:

Error: Unable to read value in indfile ''K6.indfile''
Please check the indfile and the value at row 1 and column 4.

Note: This problem could also be caused by giving any of

the parameters R, K and C the wrong number.

I've checked the paramfile and made sure that R,K, and C are correct and even checked the indifile, row 1 and column 4, but I can't seem to figure out the problem. Any advice would be greatly appreciated.

[Vikram Chhatre]

Can you post the first few lines of K6.indfile.

V

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[Kelcie Chiquillo]

Sure, no problem, below are the first 9 lines. I’ve also attached a zip file with both paramfile and K6.indfile.

first 9 lines: 

 1   1 (100) 0 : 0.168 0.165 0.168 0.164 0.163 0.171

  2   2 (73)  2 : 0.001 0.000 0.001 0.997 0.001 0.000

  3   3 (61)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

  4   4 (59)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

  5   5 (59)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

  6   6 (69)  2 : 0.000 0.000 0.000 0.999 0.000 0.000

  7   7 (57)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

  8   8 (64)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

  9   9 (55)  0 : 0.000 0.000 0.000 1.000 0.000 0.000

 10  10 (57)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

 11  11 (83)  2 : 0.000 0.000 0.000 1.000 0.000 0.000

[Vikram Chhatre]

Kelcie -

The problem is in column#4 of the INDFILE.  This number designates the population/location number.  Your individuals belong to either '0' or '2' in that column.  Change the '0' to '1' and CLUMPP should work.

V

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thanks! 

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