2021-10-25 17:43:48,365 (PID:154932) - INFO - Error, Gene doesn't contain one of the Name attribute information values: ['Name', 'gene_name']
2021-10-25 17:43:48,365 (PID:154932) - INFO - Error, Gene doesn't contain one of the Name attribute information values: ['Name', 'gene_name']
2021-10-25 17:43:50,638 (PID:154932) - INFO - Reading bamfiles
2021-10-25 17:43:50,645 (PID:154932) - INFO - Group h9, number of experiments: 6, minexperiments: 3
2021-10-25 17:43:50,645 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-1_Aligned.sortedByCoord.out.bam
2021-10-25 17:45:13,204 (PID:154932) - INFO - Detect Intron retention H9-1_Aligned.sortedByCoord.out
2021-10-25 17:47:01,009 (PID:154932) - INFO - Done Reading file H9-1_Aligned.sortedByCoord.out
2021-10-25 17:47:02,050 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-2_Aligned.sortedByCoord.out.bam
2021-10-25 17:48:31,110 (PID:154932) - INFO - Detect Intron retention H9-2_Aligned.sortedByCoord.out
2021-10-25 17:50:23,017 (PID:154932) - INFO - Done Reading file H9-2_Aligned.sortedByCoord.out
2021-10-25 17:50:24,318 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-3_Aligned.sortedByCoord.out.bam
2021-10-25 17:51:52,040 (PID:154932) - INFO - Detect Intron retention H9-3_Aligned.sortedByCoord.out
2021-10-25 17:53:41,598 (PID:154932) - INFO - Done Reading file H9-3_Aligned.sortedByCoord.out
2021-10-25 17:53:42,596 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-4_Aligned.sortedByCoord.out.bam
2021-10-25 17:55:07,300 (PID:154932) - INFO - Detect Intron retention H9-4_Aligned.sortedByCoord.out
2021-10-25 17:56:54,355 (PID:154932) - INFO - Done Reading file H9-4_Aligned.sortedByCoord.out
2021-10-25 17:56:55,592 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-5_Aligned.sortedByCoord.out.bam
2021-10-25 17:58:21,444 (PID:154932) - INFO - Detect Intron retention H9-5_Aligned.sortedByCoord.out
2021-10-25 18:00:14,796 (PID:154932) - INFO - Done Reading file H9-5_Aligned.sortedByCoord.out
2021-10-25 18:00:15,904 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//H9-6_Aligned.sortedByCoord.out.bam
2021-10-25 18:01:42,110 (PID:154932) - INFO - Detect Intron retention H9-6_Aligned.sortedByCoord.out
2021-10-25 18:03:30,188 (PID:154932) - INFO - Done Reading file H9-6_Aligned.sortedByCoord.out
2021-10-25 18:03:31,302 (PID:154932) - INFO - Group sa23, number of experiments: 6, minexperiments: 3
2021-10-25 18:03:31,304 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-1_Aligned.sortedByCoord.out.bam
2021-10-25 18:05:09,920 (PID:154932) - INFO - Detect Intron retention SA23-1_Aligned.sortedByCoord.out
2021-10-25 18:07:07,643 (PID:154932) - INFO - Done Reading file SA23-1_Aligned.sortedByCoord.out
2021-10-25 18:07:08,840 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-2_Aligned.sortedByCoord.out.bam
2021-10-25 18:08:55,674 (PID:154932) - INFO - Detect Intron retention SA23-2_Aligned.sortedByCoord.out
2021-10-25 18:11:02,083 (PID:154932) - INFO - Done Reading file SA23-2_Aligned.sortedByCoord.out
2021-10-25 18:11:03,034 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-3_Aligned.sortedByCoord.out.bam
2021-10-25 18:12:34,898 (PID:154932) - INFO - Detect Intron retention SA23-3_Aligned.sortedByCoord.out
2021-10-25 18:14:25,251 (PID:154932) - INFO - Done Reading file SA23-3_Aligned.sortedByCoord.out
2021-10-25 18:14:26,476 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-4_Aligned.sortedByCoord.out.bam
2021-10-25 18:16:03,264 (PID:154932) - INFO - Detect Intron retention SA23-4_Aligned.sortedByCoord.out
2021-10-25 18:17:57,412 (PID:154932) - INFO - Done Reading file SA23-4_Aligned.sortedByCoord.out
2021-10-25 18:17:58,460 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-5_Aligned.sortedByCoord.out.bam
2021-10-25 18:19:32,521 (PID:154932) - INFO - Detect Intron retention SA23-5_Aligned.sortedByCoord.out
2021-10-25 18:21:22,455 (PID:154932) - INFO - Done Reading file SA23-5_Aligned.sortedByCoord.out
2021-10-25 18:21:23,498 (PID:154932) - INFO - Reading bam file User/george/genex_splicing_project/star_alignment_ensembl//SA23-6_Aligned.sortedByCoord.out.bam
2021-10-25 18:22:58,579 (PID:154932) - INFO - Detect Intron retention SA23-6_Aligned.sortedByCoord.out
2021-10-25 18:24:49,164 (PID:154932) - INFO - Done Reading file SA23-6_Aligned.sortedByCoord.out
2021-10-25 18:24:50,392 (PID:154932) - INFO - Detecting LSVs ngenes: 60664
2021-10-25 18:25:27,084 (PID:154932) - INFO - 179106 LSV found
2021-10-25 18:25:27,188 (PID:154932) - INFO - DUMP file b'H9-1_Aligned.sortedByCoord.out'
2021-10-25 18:25:47,345 (PID:154932) - INFO - Create majiq file
2021-10-25 18:25:50,146 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:25:51,657 (PID:154932) - INFO - H9-1_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:25:51,841 (PID:154932) - INFO - DUMP file b'H9-2_Aligned.sortedByCoord.out'
2021-10-25 18:26:09,163 (PID:154932) - INFO - Create majiq file
2021-10-25 18:26:11,966 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:26:13,378 (PID:154932) - INFO - H9-2_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:26:13,564 (PID:154932) - INFO - DUMP file b'H9-3_Aligned.sortedByCoord.out'
2021-10-25 18:26:30,372 (PID:154932) - INFO - Create majiq file
2021-10-25 18:26:33,149 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:26:34,587 (PID:154932) - INFO - H9-3_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:26:34,778 (PID:154932) - INFO - DUMP file b'H9-4_Aligned.sortedByCoord.out'
2021-10-25 18:26:51,076 (PID:154932) - INFO - Create majiq file
2021-10-25 18:26:53,837 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:26:55,406 (PID:154932) - INFO - H9-4_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:26:55,600 (PID:154932) - INFO - DUMP file b'H9-5_Aligned.sortedByCoord.out'
2021-10-25 18:27:11,770 (PID:154932) - INFO - Create majiq file
2021-10-25 18:27:14,525 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:27:16,115 (PID:154932) - INFO - H9-5_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:27:16,312 (PID:154932) - INFO - DUMP file b'H9-6_Aligned.sortedByCoord.out'
2021-10-25 18:27:32,323 (PID:154932) - INFO - Create majiq file
2021-10-25 18:27:35,041 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:27:36,631 (PID:154932) - INFO - H9-6_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:27:36,827 (PID:154932) - INFO - DUMP file b'SA23-1_Aligned.sortedByCoord.out'
2021-10-25 18:27:52,450 (PID:154932) - INFO - Create majiq file
2021-10-25 18:27:55,185 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:27:56,728 (PID:154932) - INFO - SA23-1_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:27:56,917 (PID:154932) - INFO - DUMP file b'SA23-2_Aligned.sortedByCoord.out'
2021-10-25 18:28:12,646 (PID:154932) - INFO - Create majiq file
2021-10-25 18:28:15,287 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:28:16,741 (PID:154932) - INFO - SA23-2_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:28:16,921 (PID:154932) - INFO - DUMP file b'SA23-3_Aligned.sortedByCoord.out'
2021-10-25 18:28:32,733 (PID:154932) - INFO - Create majiq file
2021-10-25 18:28:35,445 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:28:37,032 (PID:154932) - INFO - SA23-3_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:28:37,220 (PID:154932) - INFO - DUMP file b'SA23-4_Aligned.sortedByCoord.out'
2021-10-25 18:28:53,067 (PID:154932) - INFO - Create majiq file
2021-10-25 18:28:55,793 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:28:57,329 (PID:154932) - INFO - SA23-4_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:28:57,520 (PID:154932) - INFO - DUMP file b'SA23-5_Aligned.sortedByCoord.out'
2021-10-25 18:29:12,985 (PID:154932) - INFO - Create majiq file
2021-10-25 18:29:15,680 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:29:17,301 (PID:154932) - INFO - SA23-5_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:29:17,491 (PID:154932) - INFO - DUMP file b'SA23-6_Aligned.sortedByCoord.out'
2021-10-25 18:29:33,118 (PID:154932) - INFO - Create majiq file
2021-10-25 18:29:35,820 (PID:154932) - INFO - Dump majiq file
2021-10-25 18:29:37,413 (PID:154932) - INFO - SA23-6_Aligned.sortedByCoord.out: 138085 LSVs
2021-10-25 18:29:38,821 (PID:154932) - INFO - MAJIQ Builder is ended successfully!
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