Hi Chris,
I have just pushed some changes to JSBML to be able to support the new csymbol elements (not the rest of the specs).
You can either build a new jar from the master branch or use the 1.5-SNAPSHOT maven target.
The new csymbol nodes will have the type FUNCTION_CSYMBOL so you have to use it to create new node or read existing file.
Later on, we might have a specific node type for each distribution declared in the specs like libsbml is doing.
cheers,
Nico
Any progress on JSBML support?
Chris
On Feb 25, 2019, at 5:15 PM, Lucian Smith <luciano...@gmail.com> wrote:
_______________________________________________A new version of distrib can now be found at
It does the following:* The old Distributions are now gone, replaced by a 'distribution' child of Uncertainty with a Math child, which should have a distrib-defined csymbol in it.* The UncertStatistics class is now gone, and its children moved to Uncertainty* Various edits for clarity added by Mike Hucka (thanks, Mike!)
None of these changes affect the basic use of distrib to compute distributions using csymbols; the current version of libsbml can still be used for that. Any questions/opinions, let me know!
I'll be working on getting the libsbml source updated to the above code, and then will try to implement a few of the Uncertainty features in Antimony; in the meantime, let me know if you have any issues with the basic csymbol use!
-Lucian
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Hi Matthias,
Can you provide some of the files you generated that contain the new uncertainties elements.
Thanks,
Nico
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something with everything is perfect, thanks,
Nico
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Hi Matthias,
Forgot to mention it when I have done it. I have updated the 1.5 maven snapshot of jsbml and it should be able to support all of distrib.
Nico
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