Information on vcf file

[FRANCESCA GILLANI]

Hi my name is Francesca, I'm working on vcf file extract from 1000 Genomes. I report below the vcf: 

ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.vcf.zip

What kind of analysis was done? Was an analysis done using complete genome mapping or not?

Thanks!!

[igv-help]

Sorry we don't have any information on this,  this is the help form for the Integrative Genomics Viewer.

[FRANCESCA GILLANI]

Sorry, but with the Integrative Genomics Viewer is it possible to read a vcf file? 

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[igv-help]

Yes it is,  but you asked about how a particular VCF was created, we don't know that.   You will need to contact the project or group that created the VCF,  or look at published information about it.  I think the 1000 genome project has probably published or documented somewhere their analysis.

[FRANCESCA GILLANI]

Thanks!

Best

To view this discussion on the web visit https://groups.google.com/d/msgid/igv-help/aae747b9-640a-4c03-880e-e91911312becn%40googlegroups.com.