Here's a step by step guide:
Open Hugin
Set the interface to be expert
Add images
Set the lens parameters when asked. What lens/camera combination are you using? I'm guessing 8mm and 1.5 crop. Choose circular fisheye.
Got to Masks tab. For each image, use the crop tab and drag the edges of the crop box and the crop circle to crop out the corners.
Go back to Photos tab.
Create control points (Hugin CP Find)
Optimise positions (incremental, starting from anchor)
Go to the stitcher tab
Change projection to what you need (I assume equisolid)
Change horizontal field of view to 180 degrees
Change canvas size to something like 3000x3000 (of whatever suits your input image size)
For panorama output options, only tick Exposure corrected, low dynamic range
Choose your output format
Press stitch.
It's about 2 mins worth all in all (depends on how fast your computer is to stitch). You can automate the whole process but someone else would have to explain the command line options and batch files required.