DSpace Debian ant fresh install failed

303 views

Skip to first unread message

Eugene Jose Espinoza

unread,

Mar 27, 2016, 1:24:36 PM3/27/16

to DSpace Technical Support

Hello all! I'm trying to install DSpace in Debian 7, and I think I'm at the end of the installation, however I'm at my wit's end trying to resolve the issue in my ant fresh install:

root@eugene:~/dspace/DSpace/dspace/target/dspace-installer# ant fresh_install

Buildfile: /root/dspace/DSpace/dspace/target/dspace-installer/build.xml

init_installation:

init_configs:

test_database:

[java] 2016-03-27 17:12:41,545 INFO org.dspace.servicemanager.DSpaceKernelInit @ Created new kernel: DSpaceKernel:org.dspace:name=2e2de7c6-a444-4110-972d-52f9e8e51ef1,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null

[java] 2016-03-27 17:12:41,972 WARN org.apache.commons.configuration.DefaultConfigurationBuilder @ Internal error

[java] org.apache.commons.configuration.ConfigurationException: Cannot locate configuration source local.cfg

[java] at org.apache.commons.configuration.AbstractFileConfiguration.load(AbstractFileConfiguration.java:259)

[java] at org.apache.commons.configuration.AbstractFileConfiguration.load(AbstractFileConfiguration.java:238)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder$FileConfigurationProvider.getConfiguration(DefaultConfigurationBuilder.java:1455)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder$ConfigurationBeanFactory.createBean(DefaultConfigurationBuilder.java:1321)

[java] at org.apache.commons.configuration.beanutils.BeanHelper.createBean(BeanHelper.java:390)

[java] at org.apache.commons.configuration.beanutils.BeanHelper.createBean(BeanHelper.java:412)

[java] at org.apache.commons.configuration.beanutils.BeanHelper.createBean(BeanHelper.java:426)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder.createConfigurationAt(DefaultConfigurationBuilder.java:855)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder.initCombinedConfiguration(DefaultConfigurationBuilder.java:719)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder.getConfiguration(DefaultConfigurationBuilder.java:622)

[java] at org.apache.commons.configuration.DefaultConfigurationBuilder.getConfiguration(DefaultConfigurationBuilder.java:587)

[java] at org.dspace.servicemanager.config.DSpaceConfigurationService.loadInitialConfig(DSpaceConfigurationService.java:494)

[java] at org.dspace.servicemanager.config.DSpaceConfigurationService.<init>(DSpaceConfigurationService.java:87)

[java] at org.dspace.servicemanager.DSpaceKernelImpl.start(DSpaceKernelImpl.java:148)

[java] at org.dspace.servicemanager.DSpaceKernelImpl.start(DSpaceKernelImpl.java:128)

[java] at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:47)

[java] 2016-03-27 17:12:42,589 INFO org.dspace.servicemanager.config.DSpaceConfigurationService @ Started up configuration service and loaded settings: ConfigDir=/dspace/config, Size=531

[java] 2016-03-27 17:12:42,685 INFO org.springframework.context.support.ClassPathXmlApplicationContext @ Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@14a6c449: startup date [Sun Mar 27 17:12:42 UTC 2016]; root of context hierarchy

[java] 2016-03-27 17:12:42,750 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from class path resource [spring/spring-dspace-applicationContext.xml]

[java] 2016-03-27 17:12:43,135 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/additions-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-example-services.xml]

[java] 2016-03-27 17:12:43,242 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-requestitem-services.xml]

[java] 2016-03-27 17:12:43,276 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-import-services.xml]

[java] 2016-03-27 17:12:43,398 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-discovery-services.xml]

[java] 2016-03-27 17:12:43,518 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-sherpa-configuration-services.xml]

[java] 2016-03-27 17:12:43,629 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-sherpa-services.xml]

[java] 2016-03-27 17:12:43,729 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-core-services.xml]

[java] 2016-03-27 17:12:43,778 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-services-6.0-SNAPSHOT.jar!/spring/spring-dspace-core-services.xml]

[java] 2016-03-27 17:12:43,852 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/versioning-service.xml]

[java] 2016-03-27 17:12:43,886 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/core-factory-services.xml]

[java] 2016-03-27 17:12:43,938 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/identifier-service.xml]

[java] 2016-03-27 17:12:43,959 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Overriding bean definition for bean 'org.dspace.identifier.service.IdentifierService': replacing [Generic bean: class [org.dspace.identifier.IdentifierServiceImpl]; scope=singleton; abstract=false; lazyInit=false; autowireMode=2; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-core-services.xml]] with [Generic bean: class [org.dspace.identifier.IdentifierServiceImpl]; scope=singleton; abstract=false; lazyInit=false; autowireMode=2; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/dspace/config/spring/api/identifier-service.xml]]

[java] 2016-03-27 17:12:43,960 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/discovery-solr.xml]

[java] 2016-03-27 17:12:44,015 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/bte.xml]

[java] 2016-03-27 17:12:44,097 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/requestitem.xml]

[java] 2016-03-27 17:12:44,155 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Overriding bean definition for bean 'org.dspace.app.requestitem.RequestItemAuthorExtractor': replacing [Generic bean: class [org.dspace.app.requestitem.RequestItemMetadataStrategy]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-requestitem-services.xml]] with [Generic bean: class [org.dspace.app.requestitem.RequestItemMetadataStrategy]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/dspace/config/spring/api/requestitem.xml]]

[java] 2016-03-27 17:12:44,155 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/pubmed-integration.xml]

[java] 2016-03-27 17:12:44,294 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/sherpa.xml]

[java] 2016-03-27 17:12:44,353 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Overriding bean definition for bean 'org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService': replacing [Generic bean: class [org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/root/dspace/DSpace/dspace/target/dspace-installer/lib/dspace-api-6.0-SNAPSHOT.jar!/spring/spring-dspace-addon-sherpa-configuration-services.xml]] with [Generic bean: class [org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/dspace/config/spring/api/sherpa.xml]]

[java] 2016-03-27 17:12:44,353 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/item-marking.xml]

[java] 2016-03-27 17:12:44,411 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/workflow-actions.xml]

[java] 2016-03-27 17:12:44,509 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/core-services.xml]

[java] 2016-03-27 17:12:44,608 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/core-dao-services.xml]

[java] 2016-03-27 17:12:44,672 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/discovery.xml]

[java] 2016-03-27 17:12:44,853 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/orcid-authority-services.xml]

[java] 2016-03-27 17:12:44,917 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/bitstore.xml]

[java] 2016-03-27 17:12:44,960 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader @ Loading XML bean definitions from file [/dspace/config/spring/api/core-hibernate.xml]

[java] 2016-03-27 17:12:46,690 INFO org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor @ JSR-330 'javax.inject.Inject' annotation found and supported for autowiring

[java] 2016-03-27 17:12:46,995 INFO org.springframework.context.support.ClassPathXmlApplicationContext @ Bean 'dspaceDataSource' of type [class org.apache.commons.dbcp2.BasicDataSource] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)

[java] 2016-03-27 17:12:47,003 INFO org.springframework.jndi.JndiObjectFactoryBean @ JNDI lookup failed - returning specified default object instead: javax.naming.NoInitialContextException: Need to specify class name in environment or system property, or as an applet parameter, or in an application resource file: java.naming.factory.initial

[java] 2016-03-27 17:12:47,003 INFO org.springframework.context.support.ClassPathXmlApplicationContext @ Bean 'dataSource' of type [class org.springframework.jndi.JndiObjectFactoryBean] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)

[java] 2016-03-27 17:12:47,092 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@c2df783: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.requestitem.RequestItemAuthorExtractor,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,org.dspace.app.sherpa.SHERPAService,org.dspace.app.sherpa.submit.SHERPASubmitService,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms.GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.services.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.VersioningService,requestItemServiceFactory,itemExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFactory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseServiceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.dspace.util.MultiFormatDateParser,org.dspace.app.itemimport.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,phase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dspace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFileDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,yearContrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking.ItemMarkingExtractor.availability,typeMap,collectionMap,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignactionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction,originalSubmitterAssignAction,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileReaderServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeServiceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultServiceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamServiceImpl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0,org.dspace.content.MetadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.ChoiceAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServiceImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperson.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionServiceImpl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,org.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspace.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamFormatDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSchemaDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2GroupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspace.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.CollectionRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfiguration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilterContentInOriginalBundle,sortTitle,sortDateIssued,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSource,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,sessionFactory,dataSource,dspaceDataSource,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; root of factory hierarchy

[java] 2016-03-27 17:12:48,358 INFO org.dspace.importer.external.service.ImportService @ Loading 1 import sources.

[java] 2016-03-27 17:12:48,900 INFO org.dspace.services.sessions.SessionRequestServiceImpl @ init

[java] 2016-03-27 17:12:48,946 INFO org.springframework.cache.ehcache.EhCacheManagerFactoryBean @ Initializing EhCache CacheManager

[java] 2016-03-27 17:12:49,375 INFO org.dspace.services.caching.CachingServiceImpl @ init()

[java] 2016-03-27 17:12:49,381 INFO org.dspace.services.caching.CachingServiceImpl @ Caching service initialized:

[java] ** Memory report

[java] freeMemory: 7797776

[java] totalMemory: 24522752

[java] maxMemory: 508887040

[java]

[java] ** Full report of all known caches (0):

[java]

[java] 2016-03-27 17:12:49,433 WARN org.dspace.services.email.EmailServiceImpl @ Couldn't get an email session from environment: Need to specify class name in environment or system property, or as an applet parameter, or in an application resource file: java.naming.factory.initial

[java] 2016-03-27 17:12:49,433 INFO org.dspace.services.email.EmailServiceImpl @ Initializing an email session from configuration.

[java] 2016-03-27 17:12:50,478 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@c2df783: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.requestitem.RequestItemAuthorExtractor,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,org.dspace.app.sherpa.SHERPAService,org.dspace.app.sherpa.submit.SHERPASubmitService,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms.GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.services.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.VersioningService,requestItemServiceFactory,itemExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFactory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseServiceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.dspace.util.MultiFormatDateParser,org.dspace.app.itemimport.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,phase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dspace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFileDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,yearContrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking.ItemMarkingExtractor.availability,typeMap,collectionMap,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignactionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction,originalSubmitterAssignAction,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileReaderServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeServiceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultServiceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamServiceImpl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0,org.dspace.content.MetadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.ChoiceAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServiceImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperson.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionServiceImpl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,org.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspace.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamFormatDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSchemaDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2GroupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspace.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.CollectionRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfiguration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilterContentInOriginalBundle,sortTitle,sortDateIssued,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSource,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,sessionFactory,dataSource,dspaceDataSource,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; root of factory hierarchy

[java] 2016-03-27 17:12:50,479 INFO org.dspace.servicemanager.spring.SpringServiceManager @ Spring Service Manager started up in 7883 ms with 270 services...

[java] 2016-03-27 17:12:50,504 INFO org.dspace.core.LoggerServiceImpl @ Using default log4j provided log configuration. If unintended, check your dspace.cfg for (log.init.config)

[java] 2016-03-27 17:12:50,504 INFO org.dspace.servicemanager.DSpaceKernelImpl @ DSpace kernel startup completed in 8948 ms and registered as MBean: org.dspace:name=2e2de7c6-a444-4110-972d-52f9e8e51ef1,type=DSpaceKernel

[java] 2016-03-27 17:12:51,250 INFO org.dspace.storage.rdbms.DatabaseUtils @ Loading Flyway DB migrations from: filesystem:/dspace/etc/postgres, classpath:org.dspace.storage.rdbms.sqlmigration.postgres, classpath:org.dspace.storage.rdbms.migration

[java]

[java] Attempting to connect to database

[java] Connected successfully!

[java] Database Software: PostgreSQL version 9.1.20

[java] - URL: jdbc:postgresql://localhost:5432/dspace

[java] - Driver: PostgreSQL Native Driver version PostgreSQL 9.4 JDBC4.1 (build 1206)

[java] - Username: dspace

[java] - Password: [hidden]

[java] - Schema: public

[java] 2016-03-27 17:12:51,290 INFO org.springframework.context.support.ClassPathXmlApplicationContext @ Closing org.springframework.context.support.ClassPathXmlApplicationContext@14a6c449: startup date [Sun Mar 27 17:12:42 UTC 2016]; root of context hierarchy

[java] 2016-03-27 17:12:51,301 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory @ Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@c2df783: defining beans [org.springframework.context.annotation.internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.internalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.requestitem.RequestItemAuthorExtractor,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,org.dspace.app.sherpa.SHERPAService,org.dspace.app.sherpa.submit.SHERPASubmitService,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms.GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.services.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.VersioningService,requestItemServiceFactory,itemExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFactory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseServiceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.dspace.util.MultiFormatDateParser,org.dspace.app.itemimport.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,phase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dspace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFileDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,yearContrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking.ItemMarkingExtractor.availability,typeMap,collectionMap,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignactionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction,originalSubmitterAssignAction,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileReaderServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeServiceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultServiceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamServiceImpl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0,org.dspace.content.MetadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.ChoiceAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServiceImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperson.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionServiceImpl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,org.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspace.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamFormatDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSchemaDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2GroupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspace.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.CollectionRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfiguration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilterContentInOriginalBundle,sortTitle,sortDateIssued,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSource,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,sessionFactory,dataSource,dspaceDataSource,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; root of factory hierarchy

[java] 2016-03-27 17:12:51,411 INFO org.dspace.services.caching.CachingServiceImpl @ destroy()

[java] 2016-03-27 17:12:51,428 INFO org.springframework.cache.ehcache.EhCacheManagerFactoryBean @ Shutting down EhCache CacheManager

[java] 2016-03-27 17:12:51,429 INFO org.dspace.services.sessions.SessionRequestServiceImpl @ shutdown

[java] 2016-03-27 17:12:51,512 INFO org.dspace.servicemanager.spring.SpringServiceManager @ Spring Service Manager Shutdown...

[java] 2016-03-27 17:12:51,512 INFO org.dspace.servicemanager.DSpaceServiceManager @ Shutdown DSpace core service manager

[java] 2016-03-27 17:12:51,512 INFO org.dspace.servicemanager.DSpaceKernelImpl @ DSpace kernel shutdown completed and unregistered MBean: org.dspace:name=2e2de7c6-a444-4110-972d-52f9e8e51ef1,type=DSpaceKernel

install_code:

[copy] Copying 7 files to /dspace/bin

[copy] Copying 182 files to /dspace/lib

[copy] Copying 5 files to /dspace/etc

[echo]

[echo] ====================================================================

[echo] The DSpace code has been installed.

[echo] ====================================================================

[echo]

migrate_database:

[java] 2016-03-27 17:12:57,202 INFO org.dspace.servicemanager.DSpaceKernelInit @ Created new kernel: DSpaceKernel:org.dspace:name=f02a5e05-4576-48ec-b641-83978998d1a8,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null

[java] 2016-03-27 17:12:57,677 WARN org.apache.commons.configuration.DefaultConfigurationBuilder @ Internal error