trying to install dealii 9.1.1 using candi.

[ME20D503 NEWTON]

Dear Sir/Ma'am,

trying to install dealii-9.1.1 version using candi command. i just change the version in candi.cfg from 9.4.2 to 9.1.1 as suggested.then uses candi commands to install. But i am getting error.

please help me out.

Thank you.

usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intracomm.h:101:22: warning: ‘virtual MPI::Intracomm& MPI::Intracomm::Clone() const’ can be marked override [-Wsuggest-override]
  101 |   virtual Intracomm& Clone() const;
      |                      ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:227,
                 from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
                 from /home/newton/dealii-candi/tmp/build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:65:21: warning: ‘virtual MPI::Cartcomm& MPI::Cartcomm::Clone() const’ can be marked override [-Wsuggest-override]
   65 |   virtual Cartcomm& Clone() const;
      |                     ^~~~~
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/topology.h:143:22: warning: ‘virtual MPI::Graphcomm& MPI::Graphcomm::Clone() const’ can be marked override [-Wsuggest-override]
  143 |   virtual Graphcomm& Clone() const;
      |                      ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:228,
                 from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
                 from /home/newton/dealii-candi/tmp/build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/intercomm.h:75:22: warning: ‘virtual MPI::Intercomm& MPI::Intercomm::Clone() const’ can be marked override [-Wsuggest-override]
   75 |   virtual Intercomm& Clone() const;
      |                      ^~~~~
In file included from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277,
                 from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887,
                 from /home/newton/dealii-candi/tmp/build/deal.II-v9.1.1/include/deal.II/base/config.h:439,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’:
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type]
  121 |     (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type]
  123 |     ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func);
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/archive/detail/helper_collection.hpp:27,
                 from /usr/include/boost/archive/detail/basic_iarchive.hpp:28,
                 from /usr/include/boost/archive/detail/common_iarchive.hpp:21,
                 from /usr/include/boost/archive/basic_binary_iarchive.hpp:30,
                 from /usr/include/boost/archive/binary_iarchive_impl.hpp:21,
                 from /usr/include/boost/archive/binary_iarchive.hpp:20,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/utilities.h:45,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/tensor.h:26,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/derivative_form.h:19,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:20,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/detail/no_exceptions_support.hpp: At global scope:
/usr/include/boost/detail/no_exceptions_support.hpp:17:1: note: ‘#pragma message: This header is deprecated. Use <boost/core/no_exceptions_support.hpp> instead.’
   17 | BOOST_HEADER_DEPRECATED("<boost/core/no_exceptions_support.hpp>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:48,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/serialization.hpp: In static member function ‘static boost::geometry::index::detail::rtree::load<MembersHolder>::node_pointer boost::geometry::index::detail::rtree::load<MembersHolder>::raw_apply(Archive&, unsigned int, boost::geometry::index::detail::rtree::load<MembersHolder>::size_type, boost::geometry::index::detail::rtree::load<MembersHolder>::size_type&, const parameters_type&, const translator_type&, boost::geometry::index::detail::rtree::load<MembersHolder>::allocators_type&, boost::geometry::index::detail::rtree::load<MembersHolder>::size_type)’:
/usr/include/boost/geometry/index/detail/serialization.hpp:399:49: error: ‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
  399 |             node_pointer n = rtree::create_node<Allocators, internal_node>::apply(allocators);              // MAY THROW (A)
      |                                                 ^~~~~~~~~~
      |                                                 allocators
/usr/include/boost/geometry/index/detail/serialization.hpp:399:74: error: template argument 1 is invalid
  399 |             node_pointer n = rtree::create_node<Allocators, internal_node>::apply(allocators);              // MAY THROW (A)
      |                                                                          ^
/usr/include/boost/geometry/index/detail/serialization.hpp:422:49: error: ‘Allocators’ was not declared in this scope; did you mean ‘allocators’?
  422 |             node_pointer n = rtree::create_node<Allocators, leaf>::apply(allocators);                       // MAY THROW (A)
      |                                                 ^~~~~~~~~~
      |                                                 allocators
/usr/include/boost/geometry/index/detail/serialization.hpp:422:65: error: template argument 1 is invalid
  422 |             node_pointer n = rtree::create_node<Allocators, leaf>::apply(allocators);                       // MAY THROW (A)
      |                                                                 ^
/usr/include/boost/geometry/index/detail/serialization.hpp: In function ‘void boost::serialization::load(Archive&, boost::geometry::index::rtree<V, P, I, E, A>&, unsigned int)’:
/usr/include/boost/geometry/index/detail/serialization.hpp:552:114: error: wrong number of template arguments (5, should be 1)
  552 |     typedef detail::rtree::subtree_destroyer<value_type, options_type, translator_type, box_type, allocators_type> subtree_destroyer;
      |                                                                                                                  ^
In file included from /usr/include/boost/geometry/index/detail/rtree/visitors/insert.hpp:26,
                 from /usr/include/boost/geometry/index/rtree.hpp:65,
                 from /usr/include/boost/geometry/algorithms/detail/within/multi_point.hpp:33,
                 from /usr/include/boost/geometry/algorithms/detail/within/implementation.hpp:42,
                 from /usr/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:25,
                 from /usr/include/boost/geometry/algorithms/covered_by.hpp:24,
                 from /usr/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:28,
                 from /usr/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:35,
                 from /usr/include/boost/geometry/algorithms/buffer.hpp:41,
                 from /usr/include/boost/geometry/geometry.hpp:63,
                 from /usr/include/boost/geometry.hpp:17,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/point.h:26,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/base/function.h:24,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:21,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/rtree/node/subtree_destroyer.hpp:25:7: note: provided for ‘template<class MembersHolder> class boost::geometry::index::detail::rtree::subtree_destroyer’
   25 | class subtree_destroyer
      |       ^~~~~~~~~~~~~~~~~
In file included from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/grid/grid_tools.h:45,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/include/deal.II/numerics/vector_tools.templates.h:48,
                 from /home/newton/dealii-candi/tmp/unpack/deal.II-v9.1.1/source/numerics/vector_tools_boundary.cc:17:
/usr/include/boost/geometry/index/detail/serialization.hpp:566:101: error: wrong number of template arguments (5, should be 1)
  566 |         n = detail::rtree::load<value_type, options_type, translator_type, box_type, allocators_type>
      |                                                                                                     ^
/usr/include/boost/geometry/index/detail/serialization.hpp:347:7: note: provided for ‘template<class MembersHolder> class boost::geometry::index::detail::rtree::load’
  347 | class load
      |       ^~~~
/usr/include/boost/geometry/index/detail/serialization.hpp:569:65: error: expression list treated as compound expression in initializer [-fpermissive]
  569 |         subtree_destroyer remover(n, tree.members().allocators());
      |                                                                 ^
/usr/include/boost/geometry/index/detail/serialization.hpp:572:17: error: request for member ‘release’ in ‘remover’, which is of non-class type ‘subtree_destroyer’ {aka ‘int’}
  572 |         remover.release();
      |                 ^~~~~~~
/usr/include/boost/geometry/index/detail/serialization.hpp:579:79: error: expression list treated as compound expression in initializer [-fpermissive]
  579 |     subtree_destroyer remover(tree.members().root, tree.members().allocators());
      |                                                                               ^
make[2]: *** [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:230: source/numerics/CMakeFiles/obj_numerics_debug.dir/vector_tools_boundary.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:2820: source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 2
make: *** [Makefile:136: all] Error 2

[Bruno Turcksin]

Hello,

It looks like the error is from boost. Which version are you using? What's your compiler?

Best,

Bruno

[ME20D503 NEWTON]

Dear Bruno,

i am using ubuntu 22.04.1 and g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0.

Thank you.

[Bruno Turcksin]

Do you need to use Boost in your own project? If you don't, try adding -DDEAL_II_FORCE_BUNDLED_BOOST=ON to your configuration.

Best,

Bruno

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[ME20D503 NEWTON]

Dear Bruno,

i tried adding as suggested by you and tried to change the boost version also but getting the same error.

Thank you.