there is no package called ‘ctmm’

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aldo.c...@gmail.com

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Jul 25, 2018, 9:56:13 AM7/25/18

to ctmm R user group

Dear CTMM Group:

I am trying to use for first time ctmm library. I am using Rstudio. I install the package and where I try to use the library I got this error:

Error in library(ctmm) : there is no package called ‘ctmm’

Does somebody know how to fix this error?

Thanks a lot in advance,

Aldo

Xianghui Dong

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Jul 25, 2018, 9:58:49 AM7/25/18

to ctmm R user group

It seemed that the package was not installed successfully. What's your installation procedure, and what's the system messages in the installation?

Xianghui Dong

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Jul 25, 2018, 10:33:41 AM7/25/18

to ctmm R user group

I received your reply in my email, but it was not posted in the google group. Please make sure to post in the google group.

Is there any system message/log that you can post here?

Or you can try to install with the common method for installing R packages:

Run this in R console in RStudio:

install.packages("ctmm")

On Wed, Jul 25, 2018 at 10:27 AM Aldo wrote:

I installed under RStudio on Tools-Install Packages

Aldo Camargo

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Jul 25, 2018, 10:45:18 AM7/25/18

to Xianghui Dong, ctmm R user group

I tried to install from console and I got the following errors:

> install.packages("ctmm")

Installing package into ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependency ‘rgdal’

% Total    % Received % Xferd Average Speed   Time    Time     Time Current
                                 Dload Upload   Total   Spent    Left Speed
0     0    0     0    0     0       6 1610k    6 112k    0     0100 1610k 100 1610k    0     0   499k      0 0:00:03 0:00:03 --:--:-- 499k
% Total    % Received % Xferd Average Speed   Time    Time     Time Current
                                 Dload Upload   Total   Spent    Left Speed
100 1271k 100 1271k    0     0   749k      0 0:00:01 0:00:01 --:--:-- 749k
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: x86_64-conda_cos6-linux-gnu-cc
configure: CXX: x86_64-conda_cos6-linux-gnu-c++
configure: rgdal: 1.2-16
checking for /usr/bin/svnversion... no
configure: svn revision: 701
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
ERROR: dependency ‘rgdal’ is not available for package ‘ctmm’
* removing ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4/ctmm’
Warning in install.packages :
installation of package ‘ctmm’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpiAf23W/downloaded_packages’
> detach("package:datasets", unload=TRUE)
> library("datasets", lib.loc="~/anaconda2/lib/R/library")
> install.packages("rgdal")
Installing package into ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
% Total    % Received % Xferd Average Speed   Time    Time     Time Current
                                 Dload Upload   Total   Spent    Left Speed
0     0    0     0    0     100 1610k 100 1610k    0     0   498k      0 0:00:03 0:00:03 --:--:-- 498k
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: x86_64-conda_cos6-linux-gnu-cc
configure: CXX: x86_64-conda_cos6-linux-gnu-c++
configure: rgdal: 1.2-16
checking for /usr/bin/svnversion... no
configure: svn revision: 701
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpiAf23W/downloaded_packages’

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Xianghui Dong

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Jul 25, 2018, 11:03:52 AM7/25/18

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You are using Linux and one dependent package "rgdal" was not installed successfully. You can try the instruction here.

https://ctmm-initiative.github.io/ctmmwebdoc/articles/installation.html#linux

sudo apt-get update && sudo apt-get install libgdal-dev libproj-dev

Christen Fleming

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Jul 25, 2018, 3:44:42 PM7/25/18

to ctmm R user group

Hi Aldo,

Here are all the packages I needed installed in Ubuntu:

sudo apt install fftw3 fftw3-dev libgdal1-dev libproj-dev libgeos-dev r-base-core

https://ctmm-initiative.github.io/ctmm/reference/ctmm-FAQ.html

Best,

Chris

Aldo Camargo

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Jul 26, 2018, 4:38:42 AM7/26/18

to Christen Fleming, ctmm R user group

Thanks Chris for the post, but still I am not able to install the ctmm package, I am getting the following errors:

> install.packages("ctmm")
Installing package into ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependency ‘rgdal’

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

100 1610k 100 1610k 0 0 873k 0 0:00:01 0:00:01 --:--:-- 873k

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 100 1271k 100 1271k 0 0 739k 0 0:00:01 0:00:01 --:--:-- 738k

* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: x86_64-conda_cos6-linux-gnu-cc
configure: CXX: x86_64-conda_cos6-linux-gnu-c++
configure: rgdal: 1.2-16
checking for /usr/bin/svnversion... no
configure: svn revision: 701

checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 1.11.3
checking GDAL version >= 1.6.3... yes
checking gdal: linking with --libs only... no
checking gdal: linking with --libs and --dep-libs... no
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libarmadillo.so.6, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libproj.so.9, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libpoppler.so.58, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libfreexl.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libgeos_c.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libwebp.so.5, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libepsilon.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libkmlbase.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libkmldom.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libkmlengine.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libxerces-c-3.1.so, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libopenjp2.so.7, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libjasper.so.1, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libnetcdf.so.11, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libhdf5_serial.so.10, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libmfhdfalt.so.0, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libdfalt.so.0, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libogdi.so.3.2, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libgif.so.7, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libjpeg.so.8, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libpng12.so.0, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libpq.so.5, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libdapclient.so.6, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libdap.so.17, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libspatialite.so.7, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libpcre.so.3, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libcurl-gnutls.so.4, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: warning: libmysqlclient.so.20, needed by /usr/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/usr/lib/libgdal.so: undefined reference to `opj_read_header'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_int'
/usr/lib/libgdal.so: undefined reference to `PQresultStatus'
/usr/lib/libgdal.so: undefined reference to `GEOSSymDifference_r'
/usr/lib/libgdal.so: undefined reference to `kmlengine::Href::Parse(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `PQgetvalue'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLPlatformUtils::fgMemoryManager'
/usr/lib/libgdal.so: undefined reference to `PQclear'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_blob'
/usr/lib/libgdal.so: undefined reference to `opj_set_decode_area'
/usr/lib/libgdal.so: undefined reference to `png_read_info@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsPlacemark(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Array'
/usr/lib/libgdal.so: undefined reference to `jas_image_writecmpt'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_INT_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `libdap::InternalErr::InternalErr(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `GRfileinfo'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_schar'
/usr/lib/libgdal.so: undefined reference to `PQescapeStringConn'
/usr/lib/libgdal.so: undefined reference to `png_set_gAMA@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::checkTransparencyGroup(GfxState*, bool)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::radialShadedFill(GfxState*, GfxRadialShading*, double, double)'
/usr/lib/libgdal.so: undefined reference to `pj_ctx_alloc'
/usr/lib/libgdal.so: undefined reference to `DGifOpen'
/usr/lib/libgdal.so: undefined reference to `globalParams'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_raw_data@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLatLonAltBox() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateMultiGeometry() const'
/usr/lib/libgdal.so: undefined reference to `mysql_close@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `eps_read_block_header'
/usr/lib/libgdal.so: undefined reference to `GEOSPreparedGeom_destroy_r'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::clip(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `H5Sget_simple_extent_ndims@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `SDwritechunk'
/usr/lib/libgdal.so: undefined reference to `H5Gopen1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `PQputCopyData'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLocation() const'
/usr/lib/libgdal.so: undefined reference to `WebPPictureImportRGB'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_int'
/usr/lib/libgdal.so: undefined reference to `wrapper_dgesv_'
/usr/lib/libgdal.so: undefined reference to `H5Dget_space@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `libdap::DAS::get_table(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `jpeg_std_error@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateViewVolume() const'
/usr/lib/libgdal.so: undefined reference to `nc_def_dim'
/usr/lib/libgdal.so: undefined reference to `jas_cmprof_destroy'
/usr/lib/libgdal.so: undefined reference to `GRgetiminfo'
/usr/lib/libgdal.so: undefined reference to `spatialite_cleanup_ex'
/usr/lib/libgdal.so: undefined reference to `SDreftoindex'
/usr/lib/libgdal.so: undefined reference to `png_get_tRNS@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_short'
/usr/lib/libgdal.so: undefined reference to `libdap::DDS::~DDS()'
/usr/lib/libgdal.so: undefined reference to `mysql_affected_rows@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `Hopen'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateStrokeOverprint(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `kmldom::SerializePretty[abi:cxx11](boost::intrusive_ptr<kmldom::Element> const&)'
/usr/lib/libgdal.so: undefined reference to `PQfmod'
/usr/lib/libgdal.so: undefined reference to `mysql_fetch_row@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::type3D0(GfxState*, double, double)'
/usr/lib/libgdal.so: undefined reference to `GEOSGetCentroid_r'
/usr/lib/libgdal.so: undefined reference to `GEOSDistance_r'
/usr/lib/libgdal.so: undefined reference to `GEOSSimplify_r'
/usr/lib/libgdal.so: undefined reference to `GEOSConvexHull_r'
/usr/lib/libgdal.so: undefined reference to `png_set_PLTE@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `pj_get_errno_ref'
/usr/lib/libgdal.so: undefined reference to `cln_GetGlobalBound'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::beginTextObject(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_int64'
/usr/lib/libgdal.so: undefined reference to `sqlite3_create_module_v2'
/usr/lib/libgdal.so: undefined reference to `Catalog::getPage(int)'
/usr/lib/libgdal.so: undefined reference to `GEOSGeomFromWKT_r'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::SAXParseException::SAXParseException(xercesc_3_1::SAXParseException const&)'
/usr/lib/libgdal.so: undefined reference to `nc_def_var_deflate'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsPoint(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `jpeg_abort@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `png_get_text@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `libdap::DataDDS::DataDDS(libdap::BaseTypeFactory*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateScreenOverlay() const'
/usr/lib/libgdal.so: undefined reference to `libdap::Constructor::var_end()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_double'
/usr/lib/libgdal.so: undefined reference to `Vdetach'
/usr/lib/libgdal.so: undefined reference to `H5Gget_objinfo@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::Element::AddUnknownAttributes(kmlbase::Attributes*)'
/usr/lib/libgdal.so: undefined reference to `png_set_packing@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `opj_write_tile'
/usr/lib/libgdal.so: undefined reference to `eps_get_fb_info'
/usr/lib/libgdal.so: undefined reference to `typeinfo for xercesc_3_1::SAXParseException'
/usr/lib/libgdal.so: undefined reference to `EGifPutScreenDesc'
/usr/lib/libgdal.so: undefined reference to `GooString::hasUnicodeMarker()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_user_data'
/usr/lib/libgdal.so: undefined reference to `WebPPictureAlloc'
/usr/lib/libgdal.so: undefined reference to `cln_GetRasterInfo'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateStrokeAdjust(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `H5Aget_space@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `SDstart'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_blob'
/usr/lib/libgdal.so: undefined reference to `SDsetchunk'
/usr/lib/libgdal.so: undefined reference to `jas_image_destroy'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_user_data_length'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::BaseType'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateCreate() const'
/usr/lib/libgdal.so: undefined reference to `H5Pget_chunk@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `png_write_rows@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `H5open@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_write_function'
/usr/lib/libgdal.so: undefined reference to `curl_multi_remove_handle@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `Vntagrefs'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateMiterLimit(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `H5Aget_type@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_type'
/usr/lib/libgdal.so: undefined reference to `spatialite_version'
/usr/lib/libgdal.so: undefined reference to `sqlite3_malloc'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateStyleMap() const'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Grid'
/usr/lib/libgdal.so: undefined reference to `sqlite3_reset'
/usr/lib/libgdal.so: undefined reference to `OutputDev::endMarkedContent(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `GEOSFree_r'
/usr/lib/libgdal.so: undefined reference to `H5Sclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateChange() const'
/usr/lib/libgdal.so: undefined reference to `OutputDev::opiBegin(GfxState*, Dict*)'
/usr/lib/libgdal.so: undefined reference to `GooString::append(char const*, int)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLUni::fgSAX2CoreValidation'
/usr/lib/libgdal.so: undefined reference to `curl_easy_cleanup@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_null'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_ULLONG_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsLineString(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `jpeg_read_header@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsGeometry(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFillColor(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::drawImageMask(GfxState*, Object*, Stream*, int, int, bool, bool, bool)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::endTransparencyGroup(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `jpeg_abort_compress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_value'
/usr/lib/libgdal.so: undefined reference to `wrapper_dgels_'
/usr/lib/libgdal.so: undefined reference to `initGEOS_r'
/usr/lib/libgdal.so: undefined reference to `HEreport'
/usr/lib/libgdal.so: undefined reference to `H5Dget_offset@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `curl_slist_append@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `nc_inq_ndims'
/usr/lib/libgdal.so: undefined reference to `png_set_error_fn@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `EGifPutLine'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateTimeStamp() const'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_double'
/usr/lib/libgdal.so: undefined reference to `PQresultErrorMessage'
/usr/lib/libgdal.so: undefined reference to `GRend'
/usr/lib/libgdal.so: undefined reference to `curl_easy_init@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `Hfidinquire'
/usr/lib/libgdal.so: undefined reference to `mysql_fetch_field@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_float'
/usr/lib/libgdal.so: undefined reference to `jpeg_set_defaults@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLineStyle() const'
/usr/lib/libgdal.so: undefined reference to `PQexec'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateTransfer(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::getVectorAntialias()'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::unsetSoftMaskFromImageMask(GfxState*, double*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_int64'
/usr/lib/libgdal.so: undefined reference to `curl_multi_info_read@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `WebPInitDecoderConfigInternal'
/usr/lib/libgdal.so: undefined reference to `jpeg_start_compress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `SDendaccess'
/usr/lib/libgdal.so: undefined reference to `SDfindattr'
/usr/lib/libgdal.so: undefined reference to `pj_ctx_free'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsContainer(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `kmldom::Container::add_feature(boost::intrusive_ptr<kmldom::Feature> const&)'
/usr/lib/libgdal.so: undefined reference to `eps_free_fb_info'
/usr/lib/libgdal.so: undefined reference to `H5Gget_num_objs@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `WebPDecodeRGBInto'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateCoordinates() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateListStyle() const'
/usr/lib/libgdal.so: undefined reference to `libdap::DAS::~DAS()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_text'
/usr/lib/libgdal.so: undefined reference to `jas_image_fmttostr'
/usr/lib/libgdal.so: undefined reference to `PQftable'
/usr/lib/libgdal.so: undefined reference to `lo_creat'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_LONG_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `cln_GetAttributesFormat'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateImagePyramid() const'
/usr/lib/libgdal.so: undefined reference to `png_get_sRGB@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `jpeg_read_coefficients@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `mysql_query@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::Parse(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::restoreState(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `jas_stream_close'
/usr/lib/libgdal.so: undefined reference to `nc_redef'
/usr/lib/libgdal.so: undefined reference to `sqlite3_close'
/usr/lib/libgdal.so: undefined reference to `sqlite3_create_function'
/usr/lib/libgdal.so: undefined reference to `sqlite3_errcode'
/usr/lib/libgdal.so: undefined reference to `nc_inq_libvers'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_schar'
/usr/lib/libgdal.so: undefined reference to `curl_multi_perform@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `GRendaccess'
/usr/lib/libgdal.so: undefined reference to `opj_image_tile_create'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_uchar'
/usr/lib/libgdal.so: undefined reference to `libdap::DDS::DDS(libdap::BaseTypeFactory*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `EGifPutImageDesc'
/usr/lib/libgdal.so: undefined reference to `jpeg_set_quality@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `XRef::getCatalog(Object*)'
/usr/lib/libgdal.so: undefined reference to `png_get_image_width@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_short'
/usr/lib/libgdal.so: undefined reference to `jas_image_readcmpt'
/usr/lib/libgdal.so: undefined reference to `sqlite3_vfs_register'
/usr/lib/libgdal.so: undefined reference to `DFKNTsize'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFont(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `Vsetclass'
/usr/lib/libgdal.so: undefined reference to `pj_init_plus'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePolygon() const'
/usr/lib/libgdal.so: undefined reference to `png_get_interlace_type@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_last_insert_rowid'
/usr/lib/libgdal.so: undefined reference to `SDend'
/usr/lib/libgdal.so: undefined reference to `GRreadlut'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Error'
/usr/lib/libgdal.so: undefined reference to `png_read_rows@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_DOUBLE_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `GEOSProject_r'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsPolygon(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateStyle() const'
/usr/lib/libgdal.so: undefined reference to `memcpy@GLIBC_2.14'
/usr/lib/libgdal.so: undefined reference to `jpeg_finish_compress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `png_set_IHDR@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_user_data'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsOuterBoundaryIs(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `OptionalContentGroup::getName() const'
/usr/lib/libgdal.so: undefined reference to `nc_def_var_chunking'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::fill(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `Vattach'
/usr/lib/libgdal.so: undefined reference to `GEOSPolygonize_r'
/usr/lib/libgdal.so: undefined reference to `opj_set_info_handler'
/usr/lib/libgdal.so: undefined reference to `Vfinish'
/usr/lib/libgdal.so: undefined reference to `H5Pclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `freexl_get_info'
/usr/lib/libgdal.so: undefined reference to `Vinitialize'
/usr/lib/libgdal.so: undefined reference to `GEOSCrosses_r'
/usr/lib/libgdal.so: undefined reference to `jpeg_suppress_tables@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `VFfieldtype'
/usr/lib/libgdal.so: undefined reference to `sqlite3_snprintf'
/usr/lib/libgdal.so: undefined reference to `jpeg_CreateDecompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `GEOSWKBWriter_destroy_r'
/usr/lib/libgdal.so: undefined reference to `jas_image_create0'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_uchar'
/usr/lib/libgdal.so: undefined reference to `SDidtoref'
/usr/lib/libgdal.so: undefined reference to `jpeg_finish_decompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `SDwritedata'
/usr/lib/libgdal.so: undefined reference to `PQsetClientEncoding'
/usr/lib/libgdal.so: undefined reference to `OCGs::findOcgByRef(Ref const&)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::clearPatternOpacity(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `GEOSUnionCascaded_r'
/usr/lib/libgdal.so: undefined reference to `libdap::Error::Error(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/lib/libgdal.so: undefined reference to `H5Fclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsInnerBoundaryIs(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::InputSource::InputSource(xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_name'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateCamera() const'
/usr/lib/libgdal.so: undefined reference to `VSgetfields'
/usr/lib/libgdal.so: undefined reference to `setErrorCallback(void (*)(void*, ErrorCategory, long long, char*), void*)'
/usr/lib/libgdal.so: undefined reference to `nc_inq_var_chunking'
/usr/lib/libgdal.so: undefined reference to `GlobalParams::setPrintCommands(bool)'
/usr/lib/libgdal.so: undefined reference to `png_set_write_fn@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `OutputDev::cvtUserToDev(double, double, int*, int*)'
/usr/lib/libgdal.so: undefined reference to `WebPPictureFree'
/usr/lib/libgdal.so: undefined reference to `H5Aread@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsTimeSpan(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `nc_open'
/usr/lib/libgdal.so: undefined reference to `spatialite_init_ex'
/usr/lib/libgdal.so: undefined reference to `nc_inq_vardimid'
/usr/lib/libgdal.so: undefined reference to `SDattrinfo'
/usr/lib/libgdal.so: undefined reference to `mysql_server_init@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `Hclose'
/usr/lib/libgdal.so: undefined reference to `mysql_options@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePhotoOverlay() const'
/usr/lib/libgdal.so: undefined reference to `nc_inq_dimlen'
/usr/lib/libgdal.so: undefined reference to `H5Tis_variable_str@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `jpeg_CreateCompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_libversion_number'
/usr/lib/libgdal.so: undefined reference to `png_write_end@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `GEOSGeomTypeId_r'
/usr/lib/libgdal.so: undefined reference to `pj_get_def'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_int'
/usr/lib/libgdal.so: undefined reference to `GEOSisValid_r'
/usr/lib/libgdal.so: undefined reference to `eps_decode_grayscale_block'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateDelete() const'
/usr/lib/libgdal.so: undefined reference to `PQgetisnull'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateOverlayXY() const'
/usr/lib/libgdal.so: undefined reference to `VSseek'
/usr/lib/libgdal.so: undefined reference to `sqlite3_mprintf'
/usr/lib/libgdal.so: undefined reference to `jas_stream_flush'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateIconStyle() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePair() const'
/usr/lib/libgdal.so: undefined reference to `pj_dalloc'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_seek_function'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMemory::operator new(unsigned long)'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_tables@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `nc_inq_attid'
/usr/lib/libgdal.so: undefined reference to `png_get_bit_depth@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `eps_encode_grayscale_block'
/usr/lib/libgdal.so: undefined reference to `curl_version@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `libdap::Constructor::var_begin()'
/usr/lib/libgdal.so: undefined reference to `png_create_read_struct@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `VSread'
/usr/lib/libgdal.so: undefined reference to `typeinfo for SplashOutputDev'
/usr/lib/libgdal.so: undefined reference to `opj_image_destroy'
/usr/lib/libgdal.so: undefined reference to `GifErrorString'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_double'
/usr/lib/libgdal.so: undefined reference to `PQerrorMessage'
/usr/lib/libgdal.so: undefined reference to `VSwrite'
/usr/lib/libgdal.so: undefined reference to `SDfileinfo'
/usr/lib/libgdal.so: undefined reference to `SDsetdimname'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::axialShadedFill(GfxState*, GfxAxialShading*, double, double)'
/usr/lib/libgdal.so: undefined reference to `opj_start_compress'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::eoFill(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `jp2_box_create'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_double'
/usr/lib/libgdal.so: undefined reference to `cln_GetLayerCapabilities'
/usr/lib/libgdal.so: undefined reference to `GEOSisRing_r'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_skip_function'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::BinInputStream::BinInputStream()'
/usr/lib/libgdal.so: undefined reference to `libdap::DAS::container()'
/usr/lib/libgdal.so: undefined reference to `opj_set_default_encoder_parameters'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_double'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLString::transcode(char const*, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `opj_create_compress'
/usr/lib/libgdal.so: undefined reference to `lo_open'
/usr/lib/libgdal.so: undefined reference to `H5check_version@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `opj_set_decoded_resolution_factor'
/usr/lib/libgdal.so: undefined reference to `SDreadchunk'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Float64'
/usr/lib/libgdal.so: undefined reference to `VSinquire'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateUpdate() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePoint() const'
/usr/lib/libgdal.so: undefined reference to `curl_multi_cleanup@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `Vgetid'
/usr/lib/libgdal.so: undefined reference to `cln_SelectLayer'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateTimeSpan() const'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLUni::fgXercescDefaultLocale'
/usr/lib/libgdal.so: undefined reference to `Vgetclass'
/usr/lib/libgdal.so: undefined reference to `jpeg_resync_to_restart@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `png_read_image@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSimpleField() const'
/usr/lib/libgdal.so: undefined reference to `XRef::getDocInfo(Object*)'
/usr/lib/libgdal.so: undefined reference to `libdap::www2id(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `nc_inq_attname'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_text'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLinkSnippet() const'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_m_header@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `nc_close'
/usr/lib/libgdal.so: undefined reference to `WebPPictureImportRGBA'
/usr/lib/libgdal.so: undefined reference to `H5Oclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::tilingPatternFill(GfxState*, Gfx*, Catalog*, Object*, double*, int, int, Dict*, double*, double*, int, int, int, int, double, double)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateOuterBoundaryIs() const'
/usr/lib/libgdal.so: undefined reference to `curl_slist_free_all@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `GEOSisSimple_r'
/usr/lib/libgdal.so: undefined reference to `DGifGetExtensionNext'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::SAXNotSupportedException::SAXNotSupportedException(char const*, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `GooString::~GooString()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_text'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateOrientation() const'
/usr/lib/libgdal.so: undefined reference to `vtable for libdap::DataDDS'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::stroke(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `Vinsert'
/usr/lib/libgdal.so: undefined reference to `GEOSIntersects_r'
/usr/lib/libgdal.so: undefined reference to `pj_ctx_get_errno'
/usr/lib/libgdal.so: undefined reference to `jas_stream_rewind'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_numeric_type'
/usr/lib/libgdal.so: undefined reference to `GEOSisEmpty_r'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_UINT_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `PQputCopyEnd'
/usr/lib/libgdal.so: undefined reference to `H5Aget_num_attrs@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `libdap::RCReader::instance()'
/usr/lib/libgdal.so: undefined reference to `PQftype'
/usr/lib/libgdal.so: undefined reference to `GRselect'
/usr/lib/libgdal.so: undefined reference to `GEOSBoundary_r'
/usr/lib/libgdal.so: undefined reference to `libdap::Grid::array_var()'
/usr/lib/libgdal.so: undefined reference to `H5Pget_layout@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_blob'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateLineJoin(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `jas_image_decode'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_uchar'
/usr/lib/libgdal.so: undefined reference to `nc_enddef'
/usr/lib/libgdal.so: undefined reference to `wrapper_ilaenv_'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateIconStyleIcon() const'
/usr/lib/libgdal.so: undefined reference to `SDnametoindex'
/usr/lib/libgdal.so: undefined reference to `SDreadattr'
/usr/lib/libgdal.so: undefined reference to `H5Sget_simple_extent_dims@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `opj_set_error_handler'
/usr/lib/libgdal.so: undefined reference to `pj_init_plus_ctx'
/usr/lib/libgdal.so: undefined reference to `VSfdefine'
/usr/lib/libgdal.so: undefined reference to `nc_inq_varname'
/usr/lib/libgdal.so: undefined reference to `sqlite3_prepare_v2'
/usr/lib/libgdal.so: undefined reference to `Array::get(int, Object*, int)'
/usr/lib/libgdal.so: undefined reference to `H5Sselect_hyperslab@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_double'
/usr/lib/libgdal.so: undefined reference to `sqlite3_errmsg'
/usr/lib/libgdal.so: undefined reference to `kmlengine::KmzFile::OpenFromString(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/lib/libgdal.so: undefined reference to `H5Aopen_name@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `OutputDev::endProfile()'
/usr/lib/libgdal.so: undefined reference to `png_set_iCCP@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `H5Tget_native_type@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `PQgetResult'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateBlendMode(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `GooString::GooString(char const*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_bind_int64'
/usr/lib/libgdal.so: undefined reference to `GEOSUnion_r'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateInnerBoundaryIs() const'
/usr/lib/libgdal.so: undefined reference to `curl_multi_add_handle@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `png_get_channels@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `nc_inq_format'
/usr/lib/libgdal.so: undefined reference to `opj_destroy_cstr_info'
/usr/lib/libgdal.so: undefined reference to `nc_inq_varndims'
/usr/lib/libgdal.so: undefined reference to `H5Tequal@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `spatialite_shutdown'
/usr/lib/libgdal.so: undefined reference to `VSsizeof'
/usr/lib/libgdal.so: undefined reference to `libdap::Grid::map_begin()'
/usr/lib/libgdal.so: undefined reference to `GEOSWKBWriter_setOutputDimension_r'
/usr/lib/libgdal.so: undefined reference to `VSsetname'
/usr/lib/libgdal.so: undefined reference to `H5Aclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `libdap::Error::get_error_message[abi:cxx11]() const'
/usr/lib/libgdal.so: undefined reference to `H5Oopen@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `nc_inq_dimname'
/usr/lib/libgdal.so: undefined reference to `opj_destroy_codec'
/usr/lib/libgdal.so: undefined reference to `mysql_num_rows@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `H5Giterate@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `nc_inq_nvars'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_float'
/usr/lib/libgdal.so: undefined reference to `jas_stream_memopen'
/usr/lib/libgdal.so: undefined reference to `error(ErrorCategory, long long, char const*, ...)'
/usr/lib/libgdal.so: undefined reference to `eps_decode_truecolor_block'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSchema() const'
/usr/lib/libgdal.so: undefined reference to `png_create_write_struct@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsLinearRing(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `Dict::getKey(int)'
/usr/lib/libgdal.so: undefined reference to `GEOSDifference_r'
/usr/lib/libgdal.so: undefined reference to `H5Dvlen_reclaim@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_changes'
/usr/lib/libgdal.so: undefined reference to `Vsetname'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Float32'
/usr/lib/libgdal.so: undefined reference to `H5Aget_storage_size@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `H5Screate_simple@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `Catalog::getPageRef(int)'
/usr/lib/libgdal.so: undefined reference to `GRstart'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_schar'
/usr/lib/libgdal.so: undefined reference to `H5Pget_nfilters@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `WebPConfigInitInternal'
/usr/lib/libgdal.so: undefined reference to `opj_set_default_decoder_parameters'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_text'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsGroundOverlay(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `BaseStream::~BaseStream()'
/usr/lib/libgdal.so: undefined reference to `pj_transform'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateDocument() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsTimeStamp(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `lo_close'
/usr/lib/libgdal.so: undefined reference to `PQexecParams'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_ULONG_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `PQfname'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateExtendedData() const'
/usr/lib/libgdal.so: undefined reference to `SDselect'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_int'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateNetworkLink() const'
/usr/lib/libgdal.so: undefined reference to `png_get_color_type@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `libdap::DDS::var(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::stack<libdap::BaseType*, std::deque<libdap::BaseType*, std::allocator<libdap::BaseType*> > >*)'
/usr/lib/libgdal.so: undefined reference to `jp2_encode'
/usr/lib/libgdal.so: undefined reference to `jas_matrix_create'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_USHORT_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updatePatternOpacity(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `png_get_gAMA@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `PDFDoc::getPage(int)'
/usr/lib/libgdal.so: undefined reference to `PQconnectdb'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::GetFactory()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_text'
/usr/lib/libgdal.so: undefined reference to `opj_stream_create'
/usr/lib/libgdal.so: undefined reference to `WebPEncode'
/usr/lib/libgdal.so: undefined reference to `H5Dget_type@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::drawSoftMaskedImage(GfxState*, Object*, Stream*, int, int, GfxImageColorMap*, bool, Stream*, int, int, GfxImageColorMap*, bool)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_prepare'
/usr/lib/libgdal.so: undefined reference to `Vaddtagref'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsDocument(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `freexl_worksheet_dimensions'
/usr/lib/libgdal.so: undefined reference to `H5Tget_class@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmlengine::KmzFile::ReadKmlAndGetPath(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) const'
/usr/lib/libgdal.so: undefined reference to `png_write_info@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `H5Gclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateResourceMap() const'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::endType3Char(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_vmprintf'
/usr/lib/libgdal.so: undefined reference to `GEOSIntersection_r'
/usr/lib/libgdal.so: undefined reference to `SDreaddata'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateModel() const'
/usr/lib/libgdal.so: undefined reference to `PDFDoc::displayPageSlice(OutputDev*, int, double, double, int, bool, bool, bool, int, int, int, int, bool (*)(void*), void*, bool (*)(Annot*, void*), void*, bool)'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_double'
/usr/lib/libgdal.so: undefined reference to `wrapper_dgelsd_'
/usr/lib/libgdal.so: undefined reference to `ecs_FindElement'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_bytes'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_type'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLAttDefList::getProtoType() const'
/usr/lib/libgdal.so: undefined reference to `sqlite3_free_table'
/usr/lib/libgdal.so: undefined reference to `wrapper_dgesvx_'
/usr/lib/libgdal.so: undefined reference to `ecs_CleanUp'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::Sequence'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSnippet() const'
/usr/lib/libgdal.so: undefined reference to `pj_init'
/usr/lib/libgdal.so: undefined reference to `jpeg_read_scanlines@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `H5Eget_auto1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `png_get_PLTE@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_realloc'
/usr/lib/libgdal.so: undefined reference to `mysql_error@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `libdap::Array::dim_begin()'
/usr/lib/libgdal.so: undefined reference to `jpeg_destroy@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateCTM(GfxState*, double, double, double, double, double, double)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_open_v2'
/usr/lib/libgdal.so: undefined reference to `cln_GetServerProjection'
/usr/lib/libgdal.so: undefined reference to `nc_rename_dim'
/usr/lib/libgdal.so: undefined reference to `DGifGetExtension'
/usr/lib/libgdal.so: undefined reference to `PQstatus'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateKml() const'
/usr/lib/libgdal.so: undefined reference to `jpeg_alloc_huff_table@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_free'
/usr/lib/libgdal.so: undefined reference to `GEOSBuffer_r'
/usr/lib/libgdal.so: undefined reference to `GooString::GooString()'
/usr/lib/libgdal.so: undefined reference to `pcre_free'
/usr/lib/libgdal.so: undefined reference to `Stream::getPSFilter(int, char const*)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateHotSpot() const'
/usr/lib/libgdal.so: undefined reference to `png_destroy_write_struct@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `Object::free()'
/usr/lib/libgdal.so: undefined reference to `png_get_cHRM@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `png_get_io_ptr@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `jpeg_copy_critical_parameters@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `H5Pget_filter1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::MultiGeometry::add_geometry(boost::intrusive_ptr<kmldom::Geometry> const&)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFillOpacity(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `png_get_image_height@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `freexl_open'
/usr/lib/libgdal.so: undefined reference to `opj_setup_encoder'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_short'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::InputSource::setPublicId(unsigned short const*)'
/usr/lib/libgdal.so: undefined reference to `kmlbase::intrusive_ptr_add_ref(kmlbase::Referent*)'
/usr/lib/libgdal.so: undefined reference to `EGifPutExtension'
/usr/lib/libgdal.so: undefined reference to `PQntuples'
/usr/lib/libgdal.so: undefined reference to `GifMakeMapObject'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateAtomAuthor() const'
/usr/lib/libgdal.so: undefined reference to `SDsetfillvalue'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_LLONG_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `OutputDev::cvtDevToUser(double, double, double*, double*)'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_text'
/usr/lib/libgdal.so: undefined reference to `mysql_use_result@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `jas_init'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePolyStyle() const'
/usr/lib/libgdal.so: undefined reference to `WebPDecodeRGBAInto'
/usr/lib/libgdal.so: undefined reference to `GlobalParams::GlobalParams(char const*)'
/usr/lib/libgdal.so: undefined reference to `GEOSPointOnSurface_r'
/usr/lib/libgdal.so: undefined reference to `H5Fopen@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `png_get_error_ptr@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsNetworkLink(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateLineWidth(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `nc_inq_var'
/usr/lib/libgdal.so: undefined reference to `jas_image_getfmt'
/usr/lib/libgdal.so: undefined reference to `libdap::DAS::DAS()'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::paintTransparencyGroup(GfxState*, double*)'
/usr/lib/libgdal.so: undefined reference to `DGifCloseFile'
/usr/lib/libgdal.so: undefined reference to `OutputDev::markPoint(char*, Dict*)'
/usr/lib/libgdal.so: undefined reference to `VSattach'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateLineCap(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `VSelts'
/usr/lib/libgdal.so: undefined reference to `Dict::lookup(char const*, Object*, int)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_exec'
/usr/lib/libgdal.so: undefined reference to `GRgetlutinfo'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateScale() const'
/usr/lib/libgdal.so: undefined reference to `opj_end_decompress'
/usr/lib/libgdal.so: undefined reference to `pj_free'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::drawImage(GfxState*, Object*, Stream*, int, int, GfxImageColorMap*, bool, int*, bool)'
/usr/lib/libgdal.so: undefined reference to `freexl_close'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateStrokeColorSpace(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `OutputDev::opiEnd(GfxState*, Dict*)'
/usr/lib/libgdal.so: undefined reference to `kmlengine::GetFeatureBounds(boost::intrusive_ptr<kmldom::Feature> const&, kmlengine::Bbox*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::startDoc(PDFDoc*)'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_int'
/usr/lib/libgdal.so: undefined reference to `opj_stream_set_read_function'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_float'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateScreenXY() const'
/usr/lib/libgdal.so: undefined reference to `jpeg_alloc_quant_table@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_FLOAT_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `cln_GetVersion'
/usr/lib/libgdal.so: undefined reference to `SDsetattr'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLAttDefList::isSerializable() const'
/usr/lib/libgdal.so: undefined reference to `jpeg_start_decompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `jpeg_abort_decompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `curl_easy_perform@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::beginType3Char(GfxState*, double, double, double, double, unsigned int, unsigned int*, int)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::setSoftMaskFromImageMask(GfxState*, Object*, Stream*, int, int, bool, bool, double*)'
/usr/lib/libgdal.so: undefined reference to `H5Dread@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_step'
/usr/lib/libgdal.so: undefined reference to `WebPValidateConfig'
/usr/lib/libgdal.so: undefined reference to `PQgetlength'
/usr/lib/libgdal.so: undefined reference to `GifFreeMapObject'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLString::release(char**, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFillColorSpace(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `DGifGetImageDesc'
/usr/lib/libgdal.so: undefined reference to `opj_get_cstr_info'
/usr/lib/libgdal.so: undefined reference to `H5Dopen1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_coefficients@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_int64'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSimpleData() const'
/usr/lib/libgdal.so: undefined reference to `pcre_exec'
/usr/lib/libgdal.so: undefined reference to `SDgetchunkinfo'
/usr/lib/libgdal.so: undefined reference to `WebPGetInfo'
/usr/lib/libgdal.so: undefined reference to `finishGEOS_r'
/usr/lib/libgdal.so: undefined reference to `kmldom::Container::DeleteFeatureAt(unsigned long)'
/usr/lib/libgdal.so: undefined reference to `H5Tget_size@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_declare_vtab'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsMultiGeometry(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_text'
/usr/lib/libgdal.so: undefined reference to `WebPPictureInitInternal'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::~SplashOutputDev()'
/usr/lib/libgdal.so: undefined reference to `VSgetname'
/usr/lib/libgdal.so: undefined reference to `jpeg_read_raw_data@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `PDFDoc::PDFDoc(BaseStream*, GooString*, GooString*, void*)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::InputSource::~InputSource()'
/usr/lib/libgdal.so: undefined reference to `GEOSGeom_getCoordinateDimension_r'
/usr/lib/libgdal.so: undefined reference to `PQfformat'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateAlias() const'
/usr/lib/libgdal.so: undefined reference to `GEOSGeomFromWKB_buf_r'
/usr/lib/libgdal.so: undefined reference to `vtable for libdap::BaseTypeFactory'
/usr/lib/libgdal.so: undefined reference to `GEOSTouches_r'
/usr/lib/libgdal.so: undefined reference to `jpeg_destroy_compress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::startPage(int, GfxState*, XRef*)'
/usr/lib/libgdal.so: undefined reference to `BaseStream::BaseStream(Object*, long long)'
/usr/lib/libgdal.so: undefined reference to `Vgettagrefs'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_UCHAR_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `freexl_get_worksheet_name'
/usr/lib/libgdal.so: undefined reference to `GRreadimage'
/usr/lib/libgdal.so: undefined reference to `GEOSContains_r'
/usr/lib/libgdal.so: undefined reference to `freexl_get_cell_value'
/usr/lib/libgdal.so: undefined reference to `mysql_init@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::SAXParseException::getLineNumber() const'
/usr/lib/libgdal.so: undefined reference to `png_set_compression_level@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `H5Eget_auto2@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `opj_end_compress'
/usr/lib/libgdal.so: undefined reference to `VSsetfields'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMemory::operator delete(void*)'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_uchar'
/usr/lib/libgdal.so: undefined reference to `mysql_field_count@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::SAXParseException::getColumnNumber() const'
/usr/lib/libgdal.so: undefined reference to `opj_get_decoded_tile'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateNetworkLinkControl() const'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::setVectorAntialias(bool)'
/usr/lib/libgdal.so: undefined reference to `spatialite_alloc_connection'
/usr/lib/libgdal.so: undefined reference to `jpc_decode'
/usr/lib/libgdal.so: undefined reference to `nc_inq'
/usr/lib/libgdal.so: undefined reference to `cln_DestroyClient'
/usr/lib/libgdal.so: undefined reference to `curl_multi_init@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `png_destroy_read_struct@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `Vgetname'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_short'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateData() const'
/usr/lib/libgdal.so: undefined reference to `nc_def_var'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFillOverprint(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateAll(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_error'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_marker@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `png_set_cHRM@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `pj_strerrno'
/usr/lib/libgdal.so: undefined reference to `H5Eauto_is_v2@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLPlatformUtils::Initialize(char const*, char const*, xercesc_3_1::PanicHandler*, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `H5Dget_create_plist@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `libdap::DDS::var_end()'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateItemIcon() const'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_int'
/usr/lib/libgdal.so: undefined reference to `SDsetcompress'
/usr/lib/libgdal.so: undefined reference to `cln_GetNextObject'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSize() const'
/usr/lib/libgdal.so: undefined reference to `GEOSWKBWriter_write_r'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::SAXParseException::~SAXParseException()'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLReaderFactory::createXMLReader(xercesc_3_1::MemoryManager*, xercesc_3_1::XMLGrammarPool*)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::BinInputStream::~BinInputStream()'
/usr/lib/libgdal.so: undefined reference to `opj_stream_destroy'
/usr/lib/libgdal.so: undefined reference to `lo_read'
/usr/lib/libgdal.so: undefined reference to `DGifGetRecordType'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateLineDash(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `jp2_box_destroy'
/usr/lib/libgdal.so: undefined reference to `Object::getTypeName()'
/usr/lib/libgdal.so: undefined reference to `eps_encode_truecolor_block'
/usr/lib/libgdal.so: undefined reference to `PQsetNoticeProcessor'
/usr/lib/libgdal.so: undefined reference to `kmldom::ResourceMap::add_alias(boost::intrusive_ptr<kmldom::Alias> const&)'
/usr/lib/libgdal.so: undefined reference to `png_get_iCCP@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_vfs_unregister'
/usr/lib/libgdal.so: undefined reference to `HXsetdir'
/usr/lib/libgdal.so: undefined reference to `PDFDoc::~PDFDoc()'
/usr/lib/libgdal.so: undefined reference to `Stream::getRawChar()'
/usr/lib/libgdal.so: undefined reference to `opj_create_decompress'
/usr/lib/libgdal.so: undefined reference to `libdap::DDS::var_begin()'
/usr/lib/libgdal.so: undefined reference to `GRgetlutid'
/usr/lib/libgdal.so: undefined reference to `GRattrinfo'
/usr/lib/libgdal.so: undefined reference to `WebPFreeDecBuffer'
/usr/lib/libgdal.so: undefined reference to `jpeg_simple_progression@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `png_error@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `typeinfo for BaseStream'
/usr/lib/libgdal.so: undefined reference to `GEOSDisjoint_r'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateBalloonStyle() const'
/usr/lib/libgdal.so: undefined reference to `GEOSPreparedIntersects_r'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::type3D1(GfxState*, double, double, double, double, double, double)'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsStyleMap(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `kmlbase::Attributes::Create(char const**)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLineString() const'
/usr/lib/libgdal.so: undefined reference to `PDFDoc::getNumPages()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_finalize'
/usr/lib/libgdal.so: undefined reference to `kmlengine::KmzFile::ReadFile(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) const'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_m_byte@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `jpeg_set_colorspace@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `GEOSTopologyPreserveSimplify_r'
/usr/lib/libgdal.so: undefined reference to `mysql_fetch_lengths@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsStyle(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_result_null'
/usr/lib/libgdal.so: undefined reference to `pcre_compile'
/usr/lib/libgdal.so: undefined reference to `jas_matrix_destroy'
/usr/lib/libgdal.so: undefined reference to `sqlite3_vfs_find'
/usr/lib/libgdal.so: undefined reference to `sqlite3_auto_extension'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_double'
/usr/lib/libgdal.so: undefined reference to `freexl_open_info'
/usr/lib/libgdal.so: undefined reference to `DGifSlurp'
/usr/lib/libgdal.so: undefined reference to `typeinfo for xercesc_3_1::XMLException'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateStrokeColor(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsFeature(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `pcre_study'
/usr/lib/libgdal.so: undefined reference to `jpeg_destroy_decompress@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::DOMImplementationRegistry::getDOMImplementation(unsigned short const*)'
/usr/lib/libgdal.so: undefined reference to `EGifCloseFile'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLookAt() const'
/usr/lib/libgdal.so: undefined reference to `H5Dclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLink() const'
/usr/lib/libgdal.so: undefined reference to `GEOSWithin_r'
/usr/lib/libgdal.so: undefined reference to `GEOSPrepare_r'
/usr/lib/libgdal.so: undefined reference to `PQfinish'
/usr/lib/libgdal.so: undefined reference to `DGifGetLine'
/usr/lib/libgdal.so: undefined reference to `opj_decode'
/usr/lib/libgdal.so: undefined reference to `curl_easy_setopt@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `nc_put_att_float'
/usr/lib/libgdal.so: undefined reference to `curl_easy_getinfo@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `libdap::Grid::map_end()'
/usr/lib/libgdal.so: undefined reference to `nc_inq_varid'
/usr/lib/libgdal.so: undefined reference to `H5Aiterate1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `mysql_real_connect@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `libdap::InternalErr::~InternalErr()'
/usr/lib/libgdal.so: undefined reference to `typeinfo for libdap::InternalErr'
/usr/lib/libgdal.so: undefined reference to `Catalog::readMetadata()'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_blob'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLod() const'
/usr/lib/libgdal.so: undefined reference to `Dict::lookupNF(char const*, Object*)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLString::transcode(unsigned short const*, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::InputSource::setSystemId(unsigned short const*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_open'
/usr/lib/libgdal.so: undefined reference to `nc_strerror'
/usr/lib/libgdal.so: undefined reference to `mysql_insert_id@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateRegion() const'
/usr/lib/libgdal.so: undefined reference to `mysql_server_end@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `nc_put_vara_int'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreatePlacemark() const'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateIcon() const'
/usr/lib/libgdal.so: undefined reference to `jas_cmprof_createfromclrspc'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_bytes'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::endTextObject(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `libdap::Error::~Error()'
/usr/lib/libgdal.so: undefined reference to `GEOSWKBWriter_create_r'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_count'
/usr/lib/libgdal.so: undefined reference to `nc_inq_varnatts'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLPlatformUtils::Terminate()'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateStrokeOpacity(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `png_access_version_number@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `GEOSGeom_destroy_r'
/usr/lib/libgdal.so: undefined reference to `cln_SelectRegion'
/usr/lib/libgdal.so: undefined reference to `png_set_read_fn@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `nc_inq_att'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::clipToStrokePath(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateFlatness(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `libdap::Array::dim_end()'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::drawChar(GfxState*, double, double, double, double, double, double, unsigned int, int, unsigned int*, int)'
/usr/lib/libgdal.so: undefined reference to `png_set_tRNS@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `nc_get_vara_text'
/usr/lib/libgdal.so: undefined reference to `mysql_field_seek@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `posix_spawnp@GLIBC_2.15'
/usr/lib/libgdal.so: undefined reference to `EGifOpen'
/usr/lib/libgdal.so: undefined reference to `H5Fis_hdf5@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_decltype'
/usr/lib/libgdal.so: undefined reference to `nc_inq_vartype'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateFolder() const'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLAttDefList::serialize(xercesc_3_1::XSerializeEngine&)'
/usr/lib/libgdal.so: undefined reference to `Hishdf'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::saveState(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SDsetchunkcache'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::drawMaskedImage(GfxState*, Object*, Stream*, int, int, GfxImageColorMap*, bool, Stream*, int, int, bool, bool)'
/usr/lib/libgdal.so: undefined reference to `SDgetinfo'
/usr/lib/libgdal.so: undefined reference to `png_create_info_struct@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::beginTransparencyGroup(GfxState*, double*, GfxColorSpace*, bool, bool, bool)'
/usr/lib/libgdal.so: undefined reference to `OutputDev::setDefaultCTM(double*)'
/usr/lib/libgdal.so: undefined reference to `HEpush'
/usr/lib/libgdal.so: undefined reference to `Array::getNF(int, Object*)'
/usr/lib/libgdal.so: undefined reference to `VSsetclass'
/usr/lib/libgdal.so: undefined reference to `freexl_select_active_worksheet'
/usr/lib/libgdal.so: undefined reference to `OutputDev::beginMarkedContent(char*, Dict*)'
/usr/lib/libgdal.so: undefined reference to `cln_CreateClient'
/usr/lib/libgdal.so: undefined reference to `jas_free'
/usr/lib/libgdal.so: undefined reference to `mysql_num_fields@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `jas_malloc'
/usr/lib/libgdal.so: undefined reference to `opj_setup_decoder'
/usr/lib/libgdal.so: undefined reference to `H5Eset_auto1@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `typeinfo for xercesc_3_1::BinInputStream'
/usr/lib/libgdal.so: undefined reference to `H5Eset_auto2@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `jpeg_write_scanlines@LIBJPEG_8.0'
/usr/lib/libgdal.so: undefined reference to `OutputDev::markPoint(char*)'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLUni::fgXercesSchema'
/usr/lib/libgdal.so: undefined reference to `Stream::getRawChars(int, int*)'
/usr/lib/libgdal.so: undefined reference to `png_set_sRGB@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `WebPGetFeaturesInternal'
/usr/lib/libgdal.so: undefined reference to `typeinfo for xercesc_3_1::InputSource'
/usr/lib/libgdal.so: undefined reference to `libdap::Connect::Connect(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/lib/libgdal.so: undefined reference to `jas_image_addcmpt'
/usr/lib/libgdal.so: undefined reference to `Stream::getLine(char*, int)'
/usr/lib/libgdal.so: undefined reference to `nc_get_att_schar'
/usr/lib/libgdal.so: undefined reference to `opj_set_warning_handler'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::eoClip(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::clearSoftMask(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_SCHAR_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `GEOSOverlaps_r'
/usr/lib/libgdal.so: undefined reference to `lo_write'
/usr/lib/libgdal.so: undefined reference to `png_sig_cmp@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLabelStyle() const'
/usr/lib/libgdal.so: undefined reference to `mysql_free_result@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `H5Tclose@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `kmlengine::Clone(boost::intrusive_ptr<kmldom::Element> const&)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateAtomLink() const'
/usr/lib/libgdal.so: undefined reference to `curl_multi_fdset@CURL_GNUTLS_3'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::XMLString::release(unsigned short**, xercesc_3_1::MemoryManager*)'
/usr/lib/libgdal.so: undefined reference to `VSdetach'
/usr/lib/libgdal.so: undefined reference to `H5T_NATIVE_SHORT_g@HDF5_SERIAL_1.8.7'
/usr/lib/libgdal.so: undefined reference to `sqlite3_create_module'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::updateOverprintMode(GfxState*)'
/usr/lib/libgdal.so: undefined reference to `sqlite3_column_table_name'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::gouraudTriangleShadedFill(GfxState*, GfxGouraudTriangleShading*)'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::setSoftMask(GfxState*, double*, bool, Function*, GfxColor*)'
/usr/lib/libgdal.so: undefined reference to `kmldom::AsCamera(boost::intrusive_ptr<kmldom::Element>)'
/usr/lib/libgdal.so: undefined reference to `jpc_encode'
/usr/lib/libgdal.so: undefined reference to `sqlite3_total_changes'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::endPage()'
/usr/lib/libgdal.so: undefined reference to `xercesc_3_1::InputSource::setEncoding(unsigned short const*)'
/usr/lib/libgdal.so: undefined reference to `mysql_store_result@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `jp2_encode_uuid'
/usr/lib/libgdal.so: undefined reference to `sqlite3_clear_bindings'
/usr/lib/libgdal.so: undefined reference to `kmlbase::intrusive_ptr_release(kmlbase::Referent*)'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateLinearRing() const'
/usr/lib/libgdal.so: undefined reference to `nc_create'
/usr/lib/libgdal.so: undefined reference to `PQnfields'
/usr/lib/libgdal.so: undefined reference to `sqlite3_get_table'
/usr/lib/libgdal.so: undefined reference to `SplashOutputDev::SplashOutputDev(SplashColorMode, int, bool, unsigned char*, bool, SplashThinLineMode, bool)'
/usr/lib/libgdal.so: undefined reference to `jas_image_chclrspc'
/usr/lib/libgdal.so: undefined reference to `kmldom::KmlFactory::CreateSchemaData() const'
/usr/lib/libgdal.so: undefined reference to `png_get_valid@PNG12_0'
/usr/lib/libgdal.so: undefined reference to `sqlite3_value_int'
/usr/lib/libgdal.so: undefined reference to `SDgetdimid'
/usr/lib/libgdal.so: undefined reference to `OutputDev::startProfile()'
/usr/lib/libgdal.so: undefined reference to `mysql_errno@libmysqlclient_20.0'
/usr/lib/libgdal.so: undefined reference to `SDcreate'
/usr/lib/libgdal.so: undefined reference to `jp2_box_get'
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -larmadillo
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lpoppler
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lfreexl
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lepsilon
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lkmlbase
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lkmldom
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lkmlengine
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lkmlxsd
/home/aldo/anaconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.2.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lkmlregionator
configure: Install failure: compilation and/or linkage problems.
configure: error: GDALAllRegister not found in libgdal.

ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
ERROR: dependency ‘rgdal’ is not available for package ‘ctmm’
* removing ‘/home/aldo/R/x86_64-pc-linux-gnu-library/3.4/ctmm’
Warning in install.packages :
installation of package ‘ctmm’ had non-zero exit status

The downloaded source packages are in

‘/tmp/RtmpJAJEgS/downloaded_packages’

To view this discussion on the web visit https://groups.google.com/d/msgid/ctmm-user/c358dac2-ef28-4108-b011-d81eade649b1%40googlegroups.com.

Christen Fleming

unread,

Jul 26, 2018, 10:59:20 AM7/26/18

to ctmm...@googlegroups.com

Hi Aldo,

It is still complaining about the rgdal package installation, which is not a part of ctmm but you need rgdal for any R package working with spatial data.

It looks like you have gdal installed now, but a bunch of necessary libraries for gdal (outside of R) are missing from you system. I don't know what Linux distribution you are using, but if you installed gdal via apt, then I would think that the dependencies should have been installed too...

I am not a Linux expert, but I would go down that list of libraries from libarmadillo.so.6 to libmysqlclient.so.20 and make sure that they are installed on my system. E.g., in the first case the Ubuntu package would be libarmadillo6, I think, so you would run

sudo apt-get update

sudo apt-get install libarmadillo6

Best,

Chris

...

Aldo Camargo

unread,

Jul 31, 2018, 6:06:29 AM7/31/18

to Christen Fleming, ctmm R user group

Hi Christen:

I have been trying your suggestions and some others and I still can not install ctmm package.

I am getting this error message:

> install.packages("ctmm", lib="/home/aldo/anaconda2/lib/R/library")

also installing the dependency ‘rgdal’

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

100 1610k 100 1610k 0 0 931k 0 0:00:01 0:00:01 --:--:-- 931k

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed

0 0 0 0 0 0 0 100 1271k 100 1271k 0 0 748k 0 0:00:01 0:00:01 --:--:-- 748k
Error: package or namespace load failed for ‘RevoUtilsMath’:
.onLoad failed in loadNamespace() for 'RevoUtilsMath', details:
call: NULL
error: Remove Microsoft R and then re-install.
Be sure to select MKL libraries as an install option.
Execution halted

Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status

Error: package or namespace load failed for ‘RevoUtilsMath’:
.onLoad failed in loadNamespace() for 'RevoUtilsMath', details:
call: NULL
error: Remove Microsoft R and then re-install.
Be sure to select MKL libraries as an install option.
Execution halted

Warning in install.packages :
installation of package ‘ctmm’ had non-zero exit status

The downloaded source packages are in

‘/tmp/Rtmp32Wasa/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

Best,

Aldo

On Thu, Jul 26, 2018 at 4:59 PM, Christen Fleming <chris.h...@gmail.com> wrote:

Hi Also,

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Christen Fleming

unread,

Jul 31, 2018, 11:14:20 AM7/31/18

to ctmm R user group

Hi Aldo,

It looks like you are running Microsoft R Open instead of regular R and, for whatever reason, it is giving you trouble. I am not familiar with MRO, its quirks, or how compatible it is with software written for base R.

For base R, you want "r-base" installed instead of "mro", and then you shouldn't have any R packages like "RevoUtilsMath" installed or trying to load.

I have read that python anaconda will install mro by default and that mro can conflict with r-base installations.

Best,

Chris

...

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