You may just change a model a bit:
"apple/1" "is_in" "boxes/1"
"apple/2" "is_in" "boxes/2"
"apple/3" "is_in" "boxes/3"
"apple/1" "is" "fruit"
"apple/2" "is" "fruit"
"apple/3" "is" "fruit"
And then query for g.V("bob").Out("took").Has("is","fruit")
One moment. How to set logical nefation?--
g.V("bob").Out("took").HasNOT("is","fruit")
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Thank you! This is very interesting db. Sadly that is frozen.