Gunter (Sorry for the typo, not using good behaved keyboard), thanks for your reply!
Since I am on 3.14, i have no capemgr to make sure it is really not loaded. I am not sure if I completely got your idead, but the framer being active or not should not pose an issue, the big problem is if its driver is sending data over GPIO2. Also, I don't know where the real uEnv.txt file is stored in my eMMC.
Here is the output of lsblk:
mmcblk0boot0 179:8 0 2M 1 disk
mmcblk0boot1 179:16 0 2M 1 disk
mmcblk0 179:0 0 3.6G 0 disk
├─mmcblk0p1 179:1 0 96M 0 part
└─mmcblk0p2 179:2 0 3.5G 0 part /
mmcblk0p1 is a partition that gets mounted as storage when i plug the board over USB and I don't know if those mmcblk0boot* have a filesystem or not (raw data?), all I know is that I can't mount them with mount /mmcblk0boot0 /mnt/bp0.