Silly question: Genotype Table and FILLIN

[Kate Rockenbach]

Hello All,

I just got my data all into HAPMAP format, it loaded in and is listed under Sequence.

I gather from the menus for the FILLIN imputation you have to extract inbred haplotypes first then you will have the output file to feed to the Impute by FILLIN plugin. 

I have tried a bunch of different ways, and looked through all the documentation. I'm not sure what I'm missing in order to convert this loaded HAPMAP file to be recognized as a Genotype Table?

My ultimate goal here is to get an imputed table for these varieties and then to take it to AWClust for population analysis. 

Anything you can suggest would be wonderful!

Kate

[Terry Casstevens]

Just in case you haven't seen this
https://bitbucket.org/tasseladmin/tassel-5-source/wiki/UserManual/FILLIN/FILLIN

Maybe you could post a screenshot of TASSEL.

Please follow these instructions to get more information.

https://bitbucket.org/tasseladmin/tassel-5-source/wiki/docs/ReportingTassel5Issues.pdf

Best,

Terry

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