Problem loading VCF file

[Tyler]

Hello,

When I try to upload I receive an error message "Error:java.lang.ArrayIndexOutOfBoundsException: -1

I have attached a screenshot of the error message and a copy of the log. I believe the .vcf file it too large to post

[Terry Casstevens]

I recommend updating your version of TASSEL although that will not
likely fix the issue

Can you send the first part of the VCF file that includes a few positions

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[iyaah selase]

Here are my suggestions
1. You can convert the VCF file to HapMap then upload to TASSEL
2. You can use the VCF file directly if you want to run GWAS.

good luck

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[Rachel Tavares]

I am having this same issue. I can't open it in GUI or terminal without this error. I tried to convert the vcf to hapmap in the terminal modifying the code lines below for my own file names and it also had the same error and could not use the VCF. Any help would be greatly appreciated!

## convert vcf to hmp
#run_pipeline.pl -vcf example.vcf -export TASSEL.hmp.txt -exportType Hapmap