Sage Crash Report

[HANG HUANG]

I am trying to install Sage version 9.0 on the High performance cluster at my university, which runs Linux (CentOS 7). I am installing to my local "scratch" folder since I do not have administrative permissions. I am trying to install from source code as the installing from pre-built binaries also gives me some other error. I was able to run ./configure without any issues and then when i did make, I received the following log file (attached) and error: 

Error building Sage.

The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):

* package: flint-2.5.2.p5
  log file: /scratch/user/hhuang235/sage-9.0/logs/pkgs/flint-2.5.2.p5.log
  build directory: /scratch/user/hhuang235/sage-9.0/local/var/tmp/sage/build/flint-2.5.2.p5

The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.

make[1]: *** [all-start] Error 1
make[1]: Leaving directory `/scratch/user/hhuang235/sage-9.0'
make: *** [all] Error 2

Any help would be greatly appreciated! Thank you very much for your time!

[Justin C. Walker]

Checking the log file for flint that you attached, there is this:

ccache: error: Failed to create temporary file for /home/hhuang235/.ccache/2/9/8e02d78d68b9638edd65c3e5744171-2001.manifest.tmp: Disk quota exceeded

I think that should explain the problem you are having. Is the “scratch folder” on a disk of small size, or does it have a small amount of free space? The source build of Sage does take a lot of space. On my system, Sage 9.0 uses about 7.5 GB (when complete).

HTH

Justin

--
Justin C. Walker
Curmudgeon-at-large
Director
Institute for the Absorption of Federal Funds
----
186,000 Miles per Second
Not just a good idea:
it's the law!
----

[HANG HUANG]

Thanks very much for your reply. In fact, my scratch folder has almost 1T of free space. So I am really confused of why I got that error message.

Best,

Amy

'Justin C. Walker' via sage-support <sage-s...@googlegroups.com> 于2020年4月13日周一 下午6:16写道：

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[Isuru Fernando]

Looks like you are using ccache, but CCACHE_DIR is not pointing to the scratch folder.

Delete $HOME/.ccache and set CCACHE_DIR env variable to some place like /scratch/user/hhuang235/.ccache

Isuru

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[HANG HUANG]

Thank you very much for your suggestion. But now I got another problem about the building the package xz-5.2.2.p0. I attached the log file here. Any help will be greatly appreciated!

Isuru Fernando <isu...@gmail.com> 于2020年4月13日周一 下午8:50写道：

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[Soufiane Lakhlifi]

Hello,

Here is the report of a crash that happened while trying to lunch sage:

-Operating system: Ubuntu 20.04 beta, upgraded from 19.10.

-Sage (8.9) was build  from the source under Ubuntu 19.10 and by following

 the instructions in this page http://doc.sagemath.org/html/en/installation/source.html.

 No special flags were used except to change the build directory.

-The crash happened by lunching sage (with no arguments) from the terminal,

 it is worth noting that the crash happened just after I upgraded my Ubuntu from

 19.10 to 20.10.

Best regards,

Soufiane Lakhlifi.

Zone contenant les pièces jointes

[Jean-Florent Raymond]

Hello,

Did you try to rebuild since the upgrade?
If you upgraded a package that sage needs, then sage might complain that
it cannot find the version it was used to.

It seems to be the case with libntl according to the crash report you
attached:
ImportError: libntl.so.35: cannot open shared object file: No such file
or directory

[Dima Pasechnik]

On Thu, Apr 23, 2020 at 9:42 PM Jean-Florent Raymond
<j-floren...@uca.fr> wrote:
>
> Hello,
>
> Did you try to rebuild since the upgrade?
> If you upgraded a package that sage needs, then sage might complain that
> it cannot find the version it was used to.
>
> It seems to be the case with libntl according to the crash report you
> attached:
> ImportError: libntl.so.35: cannot open shared object file: No such file
> or directory

indeed, this is to be expected - an OS update updates libraries your
application is built against, and so
it needs to be re-linked.

>
>
>
> Le 23/04/2020 à 15:10, Soufiane Lakhlifi a écrit :
> > Hello,
> >
> > Here is the report of a crash that happened while trying to lunch sage:
> >
> > -Operating system: Ubuntu 20.04 beta, upgraded from 19.10.
> > -Sage (8.9) was build from the source under Ubuntu 19.10 and by following
> > the instructions in this page
> > http://doc.sagemath.org/html/en/installation/source.html.
> > No special flags were used except to change the build directory.
> > -The crash happened by lunching sage (with no arguments) from the terminal,
> > it is worth noting that the crash happened just after I upgraded my Ubuntu
> > from
> > 19.10 to 20.10.
> >
> > Best regards,
> > Soufiane Lakhlifi.
> > Zone contenant les pièces jointes
> >
>

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