----------------------------------------------------------------------
All tests passed!
----------------------------------------------------------------------
Total time for all tests: 2418.2 seconds
cpu time: 14436.1 seconds
cumulative wall time: 18063.5 seconds
[jaap@vrede sage-9.1.beta0]$
As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html
b8f53f72e8 (HEAD -> develop, tag: 9.1.beta0, trac/develop) Updated SageMath version to 9.1.beta0 ....
5fa32aa9f8 Trac #28175: Move optional sage optimization backends (COIN, CPLEX, Gurobi) to separate Cython packages to remove OptionalExtension problems
On Debian testing running on core i7 + 16 GB RAM, upgrading a Python 3-based Sage 9.0 to 9.1.beta0 and running ptestalllong
gets 3 permanent and 5 transient failures:
File | Result | P/T |
---|---|---|
src/sage/databases/oeis.py | 1 doctest failed | T |
src/sage/plot/animate.py | 7 doctests failed | T |
src/sage/numerical/backends/glpk_backend.pyx | 1 doctest failed | P |
src/sage/tests/gap_packages.py | 1 doctest failed | P |
src/sage/misc/latex.py | 1 doctest failed | T |
src/sage/libs/glpk/error.pyx | 1 doctest failed | P |
src/sage/repl/load.py | 1 doctest failed | T |
src/sage/databases/findstat.py | 8 doctests failed | T |
All of these failures have been reported multiple times. No new failure here.
HTH,
Sage build/upgrade complete!
----------------------------------------------------------------------
All tests passed!
----------------------------------------------------------------------
Total time for all tests: 3997.5 seconds
cpu time: 18884.2 seconds
cumulative wall time: 30655.4 seconds
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On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release
<sage-r...@googlegroups.com> wrote:
>
> Dear all,
>
> I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build (incremental from a relatiively recent release, but I don't remember which) on Ubuntu 18.04.3, and I have absolutely no clue. The last bit oortunatf the error message is
>
The R problem is known, and related to recent gfortran releases.
https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/
You might instead install openblas and R from the system, they should
be recognised.
(also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev
r-base-dev libgsl-dev libcliquer-dev cliquer`)
as well as `make openblas-clean gsl-clean cliquer-clean`
before ./configure && make build
> [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed
> [r-3.6.2] make[7]: *** [integrate.o] Error 1
>
> sage starts and is otherwise usable.
>
> The log is attached. It would be great if I could avoid rebuilding all of sage, because this is an old laptop...
>
> Many many thanks,
>
> Martin
>
> --
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On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release
<sage-r...@googlegroups.com> wrote:
>
> Thanks again! It still tries to build R and fails
>
> I checked that system R starts, it does (R version 3.4.4)
Please also make sure that
pkg-config --modversion libR
outputs the version.
However there is just no "checking for R" message in your config.log,
it indicates that there are still remains of R left
in your installation.
I've opened https://trac.sagemath.org/ticket/29016
to deal with R being hard to clean away - feel free to try it.
Maybe you also need to run
make r-clean
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On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release
<sage-r...@googlegroups.com> wrote:
>
> Oh dea, this is becoming strange:
>
> The output of configure says that
>
> atlas, openblas, iconv will NOT be installed, but
>
> bzip2-1.0.6-20150304.p0
> readline-6.3.008.p0
> xz-5.2.2.p0
> pcre-8.40.p2
> curl-7.62.0.p0
>
> However, I certainly have bzip2, xz, pcre and curl on my system, and I guess also readline.
>
> Might there be a bug in configure?
You need development versions of these, see
https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation
So, on Ubuntu:
libbz2-dev
libreadline-dev (seems to be missing in docs)
liblzma-dev (this is the xz lib, iirc)
libpcre3-dev
libcurl4-openssl-dev
the last of these, libcurl4-openssl-dev was indeed missing, but configure still wants to build r :-(
> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com.
> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/a2512246-f441-4ace-82df-fd1f354bcaf5%40googlegroups.com.
On a slightly smaller machine (Debian testing, core i5, 8 GB RAM) with different installed software, an upgrade of 9.0 to 9.1.beta0 (Python 3-based) leads to ptestalllong
getting 12 failures, all transient:
Using –optional=build,dochtml,dot2tex,external,fricas,giacpy_sage,libsemigroups,memlimit,python2,sage,sagenb
External software to be detected:
cplex,ffmpeg,graphviz,gurobi,imagemagick,internet,latex,macaulay2,magma,maple,mathematica,matlab,octave,pandoc,scilab
File | Result | P/T |
---|---|---|
src/sage/plot/animate.py | 7 doctests failed | T |
src/sage/combinat/designs/ext_rep.py | 2 doctests failed | T |
src/sage/symbolic/integration/external.py | 1 doctest failed | T |
src/doc/en/constructions/linear_algebra.rst | 1 doctest failed | T |
src/sage/misc/latex.py | 1 doctest failed | T |
src/doc/en/constructions/interface_issues.rst | 1 doctest failed | T |
src/sage/databases/oeis.py | 1 doctest failed | T |
src/sage/repl/load.py | 1 doctest failed | T |
src/doc/en/developer/coding_in_other.rst | 1 doctest failed | T |
src/sage/interfaces/octave.py | 3 doctests failed | T |
src/sage/databases/findstat.py | 8 doctests failed | T |
src/sage/interfaces/magma_free.py | 2 doctests failed | T |
External software detected for doctesting:
ffmpeg,graphviz,imagemagick,internet,latex,mathematica,octave,pandoc
HTH,
Le samedi 11 janvier 2020 14:07:34 UTC+1, Emmanuel Charpentier a écrit :
On Debian testing running on core i7 + 16 GB RAM, upgrading a Python 3-based Sage 9.0 to 9.1.beta0 and running
ptestalllong
gets 3 permanent and 5 transient failures:
File Result P/T src/sage/databases/oeis.py 1 doctest failed T src/sage/plot/animate.py 7 doctests failed T src/sage/numerical/backends/glpk_backend.pyx 1 doctest failed P src/sage/tests/gap_packages.py 1 doctest failed P src/sage/misc/latex.py 1 doctest failed T src/sage/libs/glpk/error.pyx 1 doctest failed P src/sage/repl/load.py 1 doctest failed T src/sage/databases/findstat.py 8 doctests failed T All of these failures have been reported multiple times. No new failure here.
HTH,