Sage 10.7.beta0 released
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Volker Braun
Apr 2, 2025, 6:32:23 PMApr 2
to sage-release
As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html
871ba9daed1 (tag: 10.7.beta0, github/develop) Updated SageMath version to 10.7.beta0
a2b47d65bcb gh-39823: minor pep8 details in various cython files
e360d0fa94e gh-39799: typing annotation in Chow ring ideal
58eabb44712 gh-39797: Small changes in matroids
c9cf9641577 gh-39789: bump matplotlib (with its deps) to 3.10.1
f6f6e7d68fa gh-39787: Changed single colon to double colon after WARNING in relevant files
9d37b4458e3 gh-39785: Kostka-Foulkes polynomials now also for skew shapes
106432d46db gh-39781: magma interface: fix typo in a comment
6fe89e2984c gh-39779: Fix reference in chrompoly.pyx and add to master reference file
0e9b689d0a9 gh-39776: Safeguard _sage_getargspec_cython
329be070c06 gh-39766: Fix Derangements(0) to return 1 and yield the empty permutation
0630d66ffa0 gh-39758: Improve crosslink between matrix methods and small optimization
76717332135 gh-39757: Ensure _charpoly_df is interruptible
517a967964f gh-39728: CI: Remove broken wheel building for sagemath-categories
ad1fa9e8788 gh-39694: Ruff: move config to `pyproject.toml`
b40d3f9811e gh-39647: Redirect warning output from stderr to stdout in doctests
fa4c0cfe2bc gh-39641: CI: Migrate test-new to meson
4d8cca0fc86 gh-39511: Macaulay matrix for Sequence Multivariate Polynomials
6d7fd893382 gh-39419: trying to get rid of coerce_c_impl
40dd00e368e gh-39015: Meson: add sage cli
cd306865ad4 gh-39007: Fix cpu time on Windows
ea236c88e07 gh-38762: Added a Tutte Embedding Layout for Graphs
6ca04f7a40f gh-36029: k-regular sequences: boundedness
b8f98e7c7c3 (tag: 10.6, github/master) Updated SageMath version to 10.6
a2b47d65bcb gh-39823: minor pep8 details in various cython files
e360d0fa94e gh-39799: typing annotation in Chow ring ideal
58eabb44712 gh-39797: Small changes in matroids
c9cf9641577 gh-39789: bump matplotlib (with its deps) to 3.10.1
f6f6e7d68fa gh-39787: Changed single colon to double colon after WARNING in relevant files
9d37b4458e3 gh-39785: Kostka-Foulkes polynomials now also for skew shapes
106432d46db gh-39781: magma interface: fix typo in a comment
6fe89e2984c gh-39779: Fix reference in chrompoly.pyx and add to master reference file
0e9b689d0a9 gh-39776: Safeguard _sage_getargspec_cython
329be070c06 gh-39766: Fix Derangements(0) to return 1 and yield the empty permutation
0630d66ffa0 gh-39758: Improve crosslink between matrix methods and small optimization
76717332135 gh-39757: Ensure _charpoly_df is interruptible
517a967964f gh-39728: CI: Remove broken wheel building for sagemath-categories
ad1fa9e8788 gh-39694: Ruff: move config to `pyproject.toml`
b40d3f9811e gh-39647: Redirect warning output from stderr to stdout in doctests
fa4c0cfe2bc gh-39641: CI: Migrate test-new to meson
4d8cca0fc86 gh-39511: Macaulay matrix for Sequence Multivariate Polynomials
6d7fd893382 gh-39419: trying to get rid of coerce_c_impl
40dd00e368e gh-39015: Meson: add sage cli
cd306865ad4 gh-39007: Fix cpu time on Windows
ea236c88e07 gh-38762: Added a Tutte Embedding Layout for Graphs
6ca04f7a40f gh-36029: k-regular sequences: boundedness
b8f98e7c7c3 (tag: 10.6, github/master) Updated SageMath version to 10.6
de...@benjamin-hackl.at
Apr 7, 2025, 6:22:58 AMApr 7
to sage-release
Thanks for the release!
I've spent some time figuring out a bunch of build failures on MacOS 15.4 (@ Apple M4) with clang 17, and managed to have both 10.7.beta0 and 10.6 compile with the following changes:
- Additional patches to gfan, givaro, linbox, singular (all more or less sourced from their upstream repos), all collected in https://github.com/behackl/sage/commit/a7de55e0815821d77052eb453427ee0afff2f161,
- a manual upgrade of lcalc to 2.1.0 (via https://gitlab.com/sagemath/lcalc/-/releases/2.1.0)
- and https://github.com/sagemath/sage/pull/39850 (but I suppose the cleaner approach from https://github.com/sagemath/sage/pull/39526 could just be substituted for this).
When running ptestlong (MAKE="make -j8" make ptestlong) from a clean environment (in particular, no "source .homebrew-build-env"), it seemed like the documentation build part took a very long time (might be because of https://groups.google.com/g/sage-devel/c/lr03GlRBr9g/m/Yx8yo7p4AQAJ, sage.parallel.ncpus.ncpus() also returns 1 on my machine). Otherwise, I get:
----------------------------------------------------------------------
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/doctest/forker.py # 5 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/tests/cmdline.py # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/matrix/matrix2.pyx # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/rings/tate_algebra_ideal.pyx # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/misc/session.pyx # 2 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/doctest/control.py # 7 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/repl/load.py # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/rings/polynomial/plural.pyx # 6 doctests failed
----------------------------------------------------------------------
Total time for all tests: 1638.8 seconds
cpu time: 10255.8 seconds
cumulative wall time: 10530.7 seconds
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/doctest/forker.py # 5 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/tests/cmdline.py # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/matrix/matrix2.pyx # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/rings/tate_algebra_ideal.pyx # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/misc/session.pyx # 2 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/doctest/control.py # 7 doctests failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/repl/load.py # 1 doctest failed
sage -t --long --warn-long 30.0 --random-seed=74068020013893956633724212161580658271 src/sage/rings/polynomial/plural.pyx # 6 doctests failed
----------------------------------------------------------------------
Total time for all tests: 1638.8 seconds
cpu time: 10255.8 seconds
cumulative wall time: 10530.7 seconds
Of these, only the tests in the following files persisted after running them individually:
- src/sage/matrix/matrix2.pyx
- src/sage/rings/tate_algebra_ideal.pyx
- src/sage/misc/session.pyx
- src/sage/repl/load.py
After running "source .homebrew-build-env", only the test in src/sage/matrix/matrix2.pyx keeps still failing, I'll paste the stack trace below.
Benjamin
**********************************************************************
File "src/sage/matrix/matrix2.pyx", line 1731, in sage.matrix.matrix2.Matrix.pseudoinverse
Failed example:
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
Expected nothing
Got:
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: divide by zero encountered in matmul
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: overflow encountered in matmul
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: invalid value encountered in matmul
**********************************************************************
1 item had failures:
1 of 27 in sage.matrix.matrix2.Matrix.pseudoinverse
[2952 tests, 1 failure, 4.42s wall]
File "src/sage/matrix/matrix2.pyx", line 1731, in sage.matrix.matrix2.Matrix.pseudoinverse
Failed example:
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
Expected nothing
Got:
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: divide by zero encountered in matmul
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: overflow encountered in matmul
doctest:warning
File "<doctest sage.matrix.matrix2.Matrix.pseudoinverse[12]>", line 1, in <module>
Mx = M.pseudoinverse(algorithm='numpy') # needs numpy
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 2239, in pinv
res = matmul(transpose(vt), multiply(s[..., newaxis], transpose(u)))
File "/Users/behackl/code/sage-devel/local/var/lib/sage/venv-python3.13/lib/python3.13/site-packages/numpy/linalg/_linalg.py", line 3383, in matmu
l
return _core_matmul(x1, x2)
File "/opt/homebrew/Cellar/pyt...@3.13/3.13.2/Frameworks/Python.framework/Versions/3.13/lib/python3.13/warnings.py", line 110, in _showwarnmsg
sw(msg.message, msg.category, msg.filename, msg.lineno,
:
RuntimeWarning: invalid value encountered in matmul
**********************************************************************
1 item had failures:
1 of 27 in sage.matrix.matrix2.Matrix.pseudoinverse
[2952 tests, 1 failure, 4.42s wall]
Emmanuel Charpentier
Apr 7, 2025, 6:53:54 AMApr 7
to sage-release
On Debian testing running on Ryzen 9 + 64 GB RAM, upgrading 9.6.rc1 to 9.7.beta0 required a bit of tracking back before pulling. ptestlong gave four permanent errors :
---------------------------------------------------------------------- sage -t --long --warn-long 30.0 --random-seed=212318723786392310513326239181820980796 src/sage/libs/gap/element.pyx # Killed due to segmentation fault sage -t --long --warn-long 30.0 --random-seed=212318723786392310513326239181820980796 src/sage/coding/linear_code.py # 4 doctests failed sage -t --long --warn-long 30.0 --random-seed=212318723786392310513326239181820980796 src/sage/rings/real_mpfr.pyx # 1 doctest failed sage -t --long --warn-long 30.0 --random-seed=212318723786392310513326239181820980796 src/sage/rings/polynomial/plural.pyx # SignalError in doctesting framework ----------------------------------------------------------------------all of them already reported.
HTH,
Dima Pasechnik
Apr 7, 2025, 10:37:16 AMApr 7
to sage-r...@googlegroups.com
On Mon, Apr 7, 2025 at 5:22 AM de...@benjamin-hackl.at
<de...@benjamin-hackl.at> wrote:
>
> Thanks for the release!
>
> I've spent some time figuring out a bunch of build failures on MacOS 15.4 (@ Apple M4) with clang 17, and managed to have both 10.7.beta0 and 10.6 compile with the following changes:
>
> Additional patches to gfan, givaro, linbox, singular (all more or less sourced from their upstream repos), all collected in https://github.com/behackl/sage/commit/a7de55e0815821d77052eb453427ee0afff2f161,
these need to be slotted into GH issues/PRs.
<de...@benjamin-hackl.at> wrote:
>
> Thanks for the release!
>
> I've spent some time figuring out a bunch of build failures on MacOS 15.4 (@ Apple M4) with clang 17, and managed to have both 10.7.beta0 and 10.6 compile with the following changes:
>
> Additional patches to gfan, givaro, linbox, singular (all more or less sourced from their upstream repos), all collected in https://github.com/behackl/sage/commit/a7de55e0815821d77052eb453427ee0afff2f161,
I've opened https://github.com/sagemath/sage/issues/39897 to deal with
this update (should be easy)
> and https://github.com/sagemath/sage/pull/39850 (but I suppose the cleaner approach from https://github.com/sagemath/sage/pull/39526 could just be substituted for this).
Dima
> You received this message because you are subscribed to the Google Groups "sage-release" group.
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> To view this discussion visit https://groups.google.com/d/msgid/sage-release/963e12f9-6ed0-44d1-b9ad-c7e08247df00n%40googlegroups.com.
Dima Pasechnik
Apr 13, 2025, 1:58:32 AMApr 13
to sage-r...@googlegroups.com
John H Palmieri
Apr 18, 2025, 4:48:35 PMApr 18
to sage-release
On Monday, April 7, 2025 at 7:37:16 AM UTC-7 Dima Pasechnik wrote:
On Mon, Apr 7, 2025 at 5:22 AM de...@benjamin-hackl.at
<de...@benjamin-hackl.at> wrote:
>
> Thanks for the release!
>
> I've spent some time figuring out a bunch of build failures on MacOS 15.4 (@ Apple M4) with clang 17, and managed to have both 10.7.beta0 and 10.6 compile with the following changes:
>
> Additional patches to gfan, givaro, linbox, singular (all more or less sourced from their upstream repos), all collected in https://github.com/behackl/sage/commit/a7de55e0815821d77052eb453427ee0afff2f161,
these need to be slotted into GH issues/PRs.
Let me echo this. Please prepare PRs with these patches, one PR for each Sage package!
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