How do I report a bug in Sage 9.2 (app version) for macOS?

[Murray Eisenberg]

This concerns the missing openssl for python3, which prevents the jupyter server from starting under macOS Catalina 10.15.7.

How/where report this as a bug?

[Samuel Lelievre]

2020-11-10 15:46:13 UTC, Murray Eisenberg:

The current licence of OpenSSL prevents us from shipping it.

OpenSSL is changing its licence starting with OpenSSL 3,

currently in alpha stage, with alpha8 recently released:

    https://mta.openssl.org/pipermail/openssl-announce/2020-November/000184.html

(see also this blog post about alpha7)

    https://www.openssl.org/blog/blog/2020/10/20/OpenSSL3.0Alpha7/

and the work needed before releasing beta1 is tracked at

    https://github.com/openssl/openssl/milestone/17

Upgrading to OpenSSL 3 in Sage is tracked at

- Sage Trac ticket 29555

  Upgrade to OpenSSL 3.0 and make it a standard package

  https://trac.sagemath.org/ticket/29555

In the meanwhile, after downloading Sage binaries for macOS,

you can repair them using the "fix_mac_sage" script available at:

    https://github.com/3-manifolds/fix_mac_sage/

Hope this helps.  Kind regards,  --Samuel

[Dima Pasechnik]

I can only lament about the sorry state of macOS binaries support for
9.2 on macOS 10.15.7.
I get

“python3.8” cannot be opened because the developer cannot be verified.

already in a terminal session.

What works for me, totally hassle-free, is Conda. See
https://doc.sagemath.org/html/en/installation/conda.html
TL; DR

1. install Miniconda (using a Python 3.8 installer from
https://docs.conda.io/en/latest/miniconda.html#macosx-installers )
1.1. Open a new Terminal. Conda should be active there (you'll see
(base) in the prompt)
2. conda install mamba -c conda-forge # installs mamba
3. mamba create -n sage sage -c conda-forge # replaces "conda create..."
4. conda activate sage
5. sage -n # launches a Jupyter

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[Dima Pasechnik]

I'd just stop recommending the use of our macOS binaries until the
signing issue is solved.
Use Conda.

>
> Hope this helps. Kind regards, --Samuel
>

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[Matthias Koeppe]

On Tuesday, November 10, 2020 at 9:15:26 AM UTC-8, Dima Pasechnik wrote:

I'd just stop recommending the use of our macOS binaries until the
signing issue is solved.
Use Conda.

+1. 

In fact, I would suggest that we stop publishing macOS binaries until then.

[Murray Eisenberg]

I get an unexpected error doing that (with conda/anaconda already installed):

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):

      File "/opt/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1079, in __call__

        return func(*args, **kwargs)

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 900, in exception_converter

        raise e

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 894, in exception_converter

        exit_code = _wrapped_main(*args, **kwargs)

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 853, in _wrapped_main

        result = do_call(args, p)

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 741, in do_call

        exit_code = create(args, parser)

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 620, in create

        return install(args, parser, "create")

      File "/opt/anaconda3/lib/python3.8/site-packages/mamba/mamba.py", line 570, in install

        downloaded = transaction.prompt(PackageCacheData.first_writable().pkgs_dir, repos)

    RuntimeError: Download error (6) Couldn't resolve host name [https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2]

`$ /opt/anaconda3/bin/mamba create -n sage sage -c conda-forge`

  environment variables:

                 CIO_TEST=<not set>

                CLASSPATH=:/Library/Java/Extensions/mysql-connector-java-

                          bin.jar:/Users/murray/Library/texmf/texhyphj

               CONDA_ROOT=/opt/anaconda3

           CURL_CA_BUNDLE=<not set>

              EVOLVERPATH=/Users/Shared/ApplicationDocs/Math/Evolver/fe:/Users/Shared/Applicatio

                          nDocs/Math/Evolver/doc

                 INFOPATH=/Applications/Macaulay2/Macaulay2-1.13/share/info

          LD_LIBRARY_PATH=/Applications/Macaulay2/Macaulay2-1.13/lib

                  MANPATH=/opt/local/share/man::/Applications/Macaulay2/Macaulay2-1.13/share/man

                     PATH=/Users/murray/.local/bin:/Users/murray/.elan/bin:/opt/anaconda3/bin:/o

                          pt/local/lib/mysql8/bin:/Library/TeX/texbin:/opt/local/bin:/opt/local/

                          sbin:/opt/local/apache2/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sb

                          in:/Library/TeX/texbin:/usr/local/share/dotnet:/opt/local/bin:/opt/X11

                          /bin:~/.dotnet/tools:/Library/Apple/usr/bin:/Library/Frameworks/Mono.f

                          ramework/Versions/Current/Commands:/usr/local/sbin:/opt/local/Library/

                          Frameworks/Python.framework/Versions/3.8/lib:/Library/Frameworks/Pytho

                          n.framework/Versions/3.7/bin:/Library/Frameworks/Python.framework/Vers

                          ions/3.6/bin:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Ap

                          plications/Postgres.app/Contents/Versions/latest/bin:/Users/murray/Lib

                          rary/Application Support/GoodSync:/Users/murray/bin:/Users/murray/bin/

                          shell:/Users/murray/bin/python:/Applications/Julia-1.5.app/Contents/Re

                          sources/julia/bin:/Applications/Math/Singular/Contents/bin:/Applicatio

                          ns/Math/Singular/Contents/bin/lib:/Library/PostgreSQL/12/bin:/Applicat

                          ions/Macaulay2/Macaulay2-1.13/bin

       REQUESTS_CA_BUNDLE=<not set>

            SSL_CERT_FILE=<not set>

     active environment : None

       user config file : /Users/murray/.condarc

 populated config files : 

          conda version : 4.9.1

    conda-build version : 3.18.11

         python version : 3.8.3.final.0

       virtual packages : __osx=10.15.7=0

                          __unix=0=0

                          __archspec=1=x86_64

       base environment : /opt/anaconda3  (writable)

           channel URLs : https://conda.anaconda.org/conda-forge/osx-64

                          https://conda.anaconda.org/conda-forge/noarch

                          https://repo.anaconda.com/pkgs/main/osx-64

                          https://repo.anaconda.com/pkgs/main/noarch

                          https://repo.anaconda.com/pkgs/r/osx-64

                          https://repo.anaconda.com/pkgs/r/noarch

          package cache : /opt/anaconda3/pkgs

                          /Users/murray/.conda/pkgs

       envs directories : /opt/anaconda3/envs

                          /Users/murray/.conda/envs

               platform : osx-64

             user-agent : conda/4.9.1 requests/2.24.0 CPython/3.8.3 Darwin/19.6.0 OSX/10.15.7

                UID:GID : 501:20

             netrc file : None

           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

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---
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[Murray Eisenberg]

How does one use the conda binaries instead?

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[Isuru Fernando]

Is your firewall blocking https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2 ?

Isuru

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[Dima Pasechnik]

Anaconda is a different serpent :-)
I don't think it was tested, no idea if it would work.
If you install miniconda, it will go to /opt/miniconda3/ - so it's a
different tree.

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