question

[Mehdi Ghanbarifardi]

Dear all,  
I created a tree file using BEAST, then opened it with FigTree and saved a Newick tree. I want to run GMYC. It has been running for hours without any errors; however, there is no result.  
Could you please help me if there is any error with my file?  
Thanks a lot,  
Mehdi

[Alexandros Stamatakis]

The input tree for GMYC needs to be ultrametric, this does not seem to
be the case here though.

Also, the taxon names can maybe not be parsed so I would replace
complicated names like '......' -> taxon1 etc.

The branch lengths in scientific notation may also cause problems.

Alexis

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Alexandros (Alexis) Stamatakis

ERA Chair, Institute of Computer Science, Foundation for Research and
Technology - Hellas
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.biocomp.gr (Crete lab)
www.exelixis-lab.org (Heidelberg lab)