Job id (28188 and 28191) saying "something wrong" everytime

[Dr. Gitartha Kaushik]

Whenever I try to run bptp analysis for my sequences, it says something is wrong ! Kindly help

[Alexandros Stamatakis]

the classic issue is that the input tree is neither strictly bifurcating
nor in Newick format.

Alexis

On 18.12.25 10:46, Dr. Gitartha Kaushik wrote:
> Whenever I try to run bptp analysis for my sequences, it says something
> is wrong ! Kindly help
>

> --
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> species-delimitation/c6fde2b6-
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--
Alexandros (Alexis) Stamatakis

ERA Chair, Institute of Computer Science, Foundation for Research and
Technology - Hellas
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.biocomp.gr (Crete lab)
www.exelixis-lab.org (Heidelberg lab)

[Dr. Gitartha Kaushik]

Hi Alexis,

How can I overcome this issue? Please let me know the steps to ensure my input tree is correctly formatted and strictly bifurcating.

Best regards,

Dr. Gitartha Kaushik

Dr. Gitartha Kaushik

Assistant Professor

Department of Zoology,

Rangapara College,

Assam - 784505

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[Alexandros Stamatakis]

this should contain all the info you are looking for:

https://en.wikipedia.org/wiki/Newick_format

Alexis

On 18.12.25 11:57, Dr. Gitartha Kaushik wrote:
> Hi Alexis,
>
> How can I overcome this issue? Please let me know the steps to ensure my
> input tree is correctly formatted and strictly bifurcating.
>
> Best regards,
>
> Dr. Gitartha Kaushik
>
> Dr. Gitartha Kaushik
> Assistant Professor
> Department of Zoology,
> Rangapara College,
> Assam - 784505
>
>
> On Thu, 18 Dec, 2025, 3:12 pm Alexandros Stamatakis,
> <alexandros...@gmail.com

> <mailto:alexandros...@gmail.com>> wrote:
>
> the classic issue is that the input tree is neither strictly
> bifurcating
> nor in Newick format.
>
> Alexis
>
> On 18.12.25 10:46, Dr. Gitartha Kaushik wrote:
> > Whenever I try to run bptp analysis for my sequences, it says
> something
> > is wrong ! Kindly help
> >
> > --
> > You received this message because you are subscribed to the Google
> > Groups "PTP and GMYC species delimitation" group.
> > To unsubscribe from this group and stop receiving emails from it,
> send
> > an email to ptp-species-delimi...@googlegroups.com

> <mailto:ptp-species-delimitation%2Bunsu...@googlegroups.com>
> > <mailto:ptp-species-delimi...@googlegroups.com
> <mailto:ptp-species-delimitation%2Bunsu...@googlegroups.com>>.

> > To view this discussion visit https://groups.google.com/d/msgid/

> ptp- <https://groups.google.com/d/msgid/ptp->
> > species-delimitation/c6fde2b6-
> > f7dd-4626-93b6-73d0b2a4b664n%40googlegroups.com
> <http://40googlegroups.com> <https://
> > groups.google.com/d/msgid/ptp-species-delimitation/c6fde2b6-
> <http://groups.google.com/d/msgid/ptp-species-delimitation/c6fde2b6->
> > f7dd-4626-93b6-73d0b2a4b664n%40googlegroups.com
> <http://40googlegroups.com>?

> > utm_medium=email&utm_source=footer>.
>
> --
> Alexandros (Alexis) Stamatakis
>
> ERA Chair, Institute of Computer Science, Foundation for Research and
> Technology - Hellas
> Research Group Leader, Heidelberg Institute for Theoretical Studies
> Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
>

> www.biocomp.gr <http://www.biocomp.gr>       (Crete lab)
> www.exelixis-lab.org <http://www.exelixis-lab.org> (Heidelberg lab)

>
> --
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> species-delimitation/afd2c60d-31f4-40db-
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> ptp-species-delimitation/afd2c60d-31f4-40db-
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