Hope you doing well.
I was trying to estimate PRS using the following commands.
./plink2 --bfile toy --linear --pheno toy.dat --allow-no-sex --out toy
./plink1.9 --bfile toy --score toy.assoc.linear --out toy
getting following error
Logging to toy.log.
Options in effect:
--bfile toy
--out toy
--score toy.assoc.linear
3789 MB RAM detected; reserving 1894 MB for main workspace.
2877 variants loaded from .bim file.
1000 people (0 males, 0 females, 1000 ambiguous) loaded from .fam.
Ambiguous sex IDs written to toy.nosex .
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 1000 founders and 0 nonfounders present.
Calculating allele frequencies... done.
2877 variants and 1000 people pass filters and QC.
Note: No phenotypes present.
Error: No valid entries in --score file.
I will appreciate to solve the problem.
Thanks in advance.
Kindest regards
Momin
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