Metadata block for describing chemical reactions

[Dorothea Iglezakis]

Dear Dataverse-community,

we have a request from our researchers to add a metadata block for data about chemical reactions. In the specific case it's about enzyme catalysis and we want to map information from EnzymeML-files (an XML-based data-with-metadata-format basing on SBML, https://fairdomhub.org/programmes/66) to our Dataverse instance DaRUS. Before we start to work on a metadata block, I wanted to ask if someone of you already has such a metadata block or is working on or knows someone who is working on this (or knowing a metadata standard or schema we can build on).

In this context, I would also like to express our great interest in some place to discuss metadata blocks as mentioned in #6700. To our great regret we missed this years Dataverse Community Meeting.

Kind regards,

Dorothea Iglezakis (University of Stuttgart, Germany)

[Philip Durbin]

Hi Dorothea,

That's great news that you're working on a metadata block about chemical reactions. I don't personally know of anyone working in this area but especially since you mentioned missing the community meeting I wanted to point out to you and others that a new "flexible metadata" working group is forming.

The "GDCC working groups" announcement can be found here: https://groups.google.com/g/dataverse-community/c/EY0dduRj3Ac/m/EDcEQHLoAwAJ

Here's a direct link where people can sign up to the flexible metadata group and other groups: https://docs.google.com/document/d/1LTLjLM5sR07SAEqO7u-QgRp-StO327WS2TdbR2KdPxY/edit?usp=sharing

Thanks,

Phil

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Philip Durbin
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[Iglezakis, Dorothea]

Hi Phil,

thanks a lot for the fast answer and the links, I already put in my name in the flexible metadata group (and think about the large data group as well).

Kind regards,

Dorothea

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Von: dataverse...@googlegroups.com <dataverse...@googlegroups.com> im Auftrag von Philip Durbin <philip...@harvard.edu>
Gesendet: Donnerstag, 16. Juli 2020 16:36
An: dataverse...@googlegroups.com
Betreff: Re: [Dataverse-Users] Metadata block for describing chemical reactions

 

Hi Dorothea,

That's great news that you're working on a metadata block about chemical reactions. I don't personally know of anyone working in this area but especially since you mentioned missing the community meeting I wanted to point out to you and others that a new "flexible metadata" working group is forming.

The "GDCC working groups" announcement can be found here: https://groups.google.com/g/dataverse-community/c/EY0dduRj3Ac/m/EDcEQHLoAwAJ

Here's a direct link where people can sign up to the flexible metadata group and other groups: https://docs.google.com/document/d/1LTLjLM5sR07SAEqO7u-QgRp-StO327WS2TdbR2KdPxY/edit?usp=sharing

Working Groups from #dataverse2020 - Google Docs docs.google.com Dataverse2020 - New Working Groups General Questions Would it make sense to create an IQSS project on github for each working group? (To manage the issues which are being worked on.) -> Yes Do you need to be a GDCC member to participate in GDCC working groups? -> No! Which communication chan...

Thanks,

Phil

On Thu, Jul 16, 2020 at 5:24 AM Dorothea Iglezakis <dorothea....@ub.uni-stuttgart.de> wrote:

Dear Dataverse-community,

we have a request from our researchers to add a metadata block for data about chemical reactions. In the specific case it's about enzyme catalysis and we want to map information from EnzymeML-files (an XML-based data-with-metadata-format basing on SBML, https://fairdomhub.org/programmes/66) to our Dataverse instance DaRUS. Before we start to work on a metadata block, I wanted to ask if someone of you already has such a metadata block or is working on or knows someone who is working on this (or knowing a metadata standard or schema we can build on).

In this context, I would also like to express our great interest in some place to discuss metadata blocks as mentioned in #6700. To our great regret we missed this years Dataverse Community Meeting.

Kind regards,

Dorothea Iglezakis (University of Stuttgart, Germany)

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Philip Durbin
Software Developer for http://dataverse.org
http://www.iq.harvard.edu/people/philip-durbin

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