TPP 4.6.1 Amazon Machine Image is now available

[Joseph Slagel]

Announcing the availability of an official Amazon Machine Image for TPP 4.6.1.

For some time now I've been building and maintaining Amazon Machine Images for TPP.  These AMI's are build off of the official Ubuntu images with TPP installed along with some other useful open source proteomics programs.  You're welcome to use these images directly or can use them to build your own.  If you have any questions or requests please let me know.

More information is available at:

http://tools.proteomecenter.org/wiki/index.php?title=TPP_Amazon_Machine_Images

Cheers,
Joe

[Brett Phinney]

Hi Joe, do you point me in the right direction to download the ubuntu tpp machine images?


Cheers

Brett

[Joseph Slagel]

Hi Brett,

Amazon machine images can't necessarily be downloaded, they are really for use only on Amazons EC2 cloud product.  Though I have heard of ways of making snapshots into a open machine format and possibly getting this to run in another virtual machine environment.  What virtual platform are you trying to use?

-Joe

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[Joseph Slagel]

Here's a post with some instructions that might work:

http://linux.blogs.com.np/2010/04/05/how-to-move-a-virtual-machine-from-ec2-to-virtualbox-or-kvm/

though it might be easier though to start with a standard Ubuntu image and just run the scripts that I run to setup the AMI images.  Here's a short set of instructions on how to do this.  If you go this route and have any questions/problems please let me know.

http://tools.proteomecenter.org/wiki/index.php?title=Amazon_EC2_AMI#Building

-Joe

On Fri, Jan 11, 2013 at 11:22 AM, Brett Phinney <bsph...@my.abrf.org> wrote:

Thanks Joe, there are a bunch of people work with that that use the amazon cloud a lot so they should be able to get the amazon tpp image up and running. I was looking for some sort of ubuntu or other linux image tihe teh ttp installed that I can run in either vmware or virturalbox. Amazon is great, but Q-exactive data is really big and I was looking for a shortcut to get tpp up and running locally

Cheers

Brett

To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/x8xvxIzuHucJ.

[Brett Phinney]

Thanks Joe, I'll have a look at those. if I end up building a new tpp ubuntu vm image i'll send it to you in the the off chance others would be interested in it

Cheers

Brett

[Brian Hampton]

Hi Joe,

I have yet to try the Amazon E2C images via TPP 4.6.x so I am asking if the full TPP is functional on the Ubuntu  images..  The reason I ask is that on my Ubuntu 12.04 install of TPP 4.6.1 and also back to 4.5.2 the pipeline works fine for all the prophets and ASAPRatio.  However, displaying the pages showing the peak integration areas for ASAPRatio do not work for me.  I just get a blank page.  The referring page generated when you click on the ratio link from the protein results page shows up fine.

So I'm really asking if TPP for linux is the problem or if I just don't have something set up right on my Ubuntu install.  FYI, I port my result files over to a Win7 install of TPP and it all works fine.  So its not the data.

Thanks in advance!

Brian

[Joseph Slagel]

Brian,

We'll take a closer look at what your reporting.  It could be a bug on the Linux side but its more likely something in the configuration.

-Joe