SPADA updated to generate a GFF comparison table

[Peng Zhou]

A table comparing the predicted gene models with existing gene annotation will be generated at the end of the pipeline, it will tell how many predicted models are already in the existing annotation file (either exactly the same or partial overlap), and how many predictions are new.

For more see: https://code.google.com/p/medicago/wiki/SPADA_Readme#Output

[Joseph Guhlin]

Do you have a run of this I can see? I just want to examine the output
for it (With the other output from SPADA) before the meeting.

If not that isn't a problem, was just curious.

Thanks,
--Joseph

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[Peng Zhou]

Sure, attahced is an output of Athaliana.

On Friday, July 13, 2012 11:22:54 AM UTC-5, Joseph wrote:

Do you have a run of this I can see? I just want to examine the output
for it (With the other output from SPADA) before the meeting.

If not that isn't a problem, was just curious.

Thanks,
--Joseph

On Fri, Jul 13, 2012 at 11:02 AM, Peng Zhou <zhoupe...@gmail.com> wrote:
> A table comparing the predicted gene models with existing gene annotation
> will be generated at the end of the pipeline, it will tell how many
> predicted models are already in the existing annotation file (either exactly
> the same or partial overlap), and how many predictions are new.
>
> For more see: https://code.google.com/p/medicago/wiki/SPADA_Readme#Output
>
> --
> You received this message because you are subscribed to the Google Groups
> "SPADA" group.
> To view this discussion on the web visit
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> To post to this group, send email to sp...@googlegroups.com.
> To unsubscribe from this group, send email to

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