Reconnaissance metadynamics analysis plugin?

[coyote...@yahoo.com]

Regarding reconnaissance metadynamics, there's a phrase in the manual: "However, a graphical tool that can be added to vmd is available from the PLUMED website. With this tool one can visualize the results from from reconnaissance metadynamics simulation." However, neither CVtool nor METAGUI plugins for MD don't seem to be able to handle BASINS etc. files. I guess the analysis tools are not implemented yet?

Best,

Vis

[Omar Valsson]

Hi Vis,

I think that here the manual refers to the GISMO tool written by Gareth Tribello, see the following links for more information on it:

http://sketchmap.berlios.de/compose.php?page=gismo
http://sketchmap.berlios.de/compose.php?page=code

Regards,
Omar

> --
> You received this message because you are subscribed to the Google Groups "PLUMED users" group.
> To view this discussion on the web visit https://groups.google.com/d/msg/plumed-users/-/ZVKfpwjjz9QJ.
> To post to this group, send email to plumed...@googlegroups.com (mailto:plumed...@googlegroups.com).
> To unsubscribe from this group, send email to plumed-users...@googlegroups.com (mailto:plumed-users...@googlegroups.com).
> For more options, visit this group at http://groups.google.com/group/plumed-users?hl=en.

[coyote...@yahoo.com]

Thanks Omar!

Actually that git doesn't work, but I was able to locate sketchmap using search facility http://git.berlios.de/cgi-bin/gitweb.cgi, and afterwards downloading the latest snapshot using browser.

Vis

[coyote...@yahoo.com]

By "that git" I meant the one that is mentioned on the url pages Omar wrote (git clone git://git.berlios.de/sketchmap)
Vis