Re: Getting info about network

[Alexander Pico]

Hi Juli,

I don't know about "cityscape"... :) but in Cytoscape you can export a network as a SIF file, which stands for Simple Interaction Format and give one line per interaction. It can be read with any text editor or as a table in Excel. I don't know of a format that lists all edges per gene on a single line, however.

 - Alex

On Saturday, October 27, 2012 5:15:49 PM UTC-7, Julianne Grose wrote:

We just started using cityscape yesterday and have mapped a very large network (2,000 nodes,  600,000 edges).  I am looking for a simple way to get data back. HOw do I just print out a table that says gene X has 16 edges and they are A, B, C, D, E,  etc?

thank you for your help!

Juli

[Julianne Grose]

So sorry- a typo!! 

Thanks Alex.  I did try the SIF file.  I was hoping for the other.  Thanks again,

JHG

Julianne H. Grose, Ph.D.
Assistant Professor of Microbiology and Molecular Biology
751 WIDB
Brigham Young University
Juliann...@byu.edu
(801) 422-4940

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From: cytoscape...@googlegroups.com [cytoscape...@googlegroups.com] on behalf of Alexander Pico [ap...@gladstone.ucsf.edu]
Sent: Sunday, October 28, 2012 3:36 PM
To: cytoscape...@googlegroups.com
Subject: [cytoscape-helpdesk] Re: Getting info about network

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