Getting current network

[Omar Wagih]

How can you get the current network being looked at?

Online says use this through the CyAppAdapter, but this does not seem to be available in the most recent release. Is there something I'm missing?

Cheers

[Scooter Morris]

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Hi Omar,
    The current network is maintained by the CyApplicationManager.  So, from your CyAppAdapter:

    CyNetwork currentNetwork = appAdapter.getCyApplicationManager().getCurrentNetwork();

-- scooter

[Omar Wagih]

CyAppAdapter does not exist in the release I have... 

Did a grep on "app" in the karaf terminal:

Cytoscape 3.0.0-M5> list |  grep app

[  87] [Active     ] [            ] [  104] Molecular interaction cluster (OSGi wrapped version w/dependencies) (1.6)

[  97] [Active     ] [            ] [  110] Cytoscape Swing Application API (swing-application-api) (3.0.0.beta2)

[  99] [Active     ] [            ] [  110] Cytoscape App API (app-api) (3.0.0.beta2)

[ 100] [Active     ] [            ] [  110] Cytoscape Swing App API (swing-app-api) (3.0.0.beta2)

[ 109] [Active     ] [            ] [  110] Cytoscape Application API (application-api) (3.0.0.beta2)

[ 128] [Active     ] [            ] [  135] Cytoscape Application Impl (application-impl) (3.0.0.alpha9)

[ 135] [Active     ] [            ] [  160] Cytoscape Swing Application Impl (swing-application-impl) (3.0.0.alpha9)

[ 162] [Active     ] [            ] [  175] Cytoscape App Impl (app-impl) (3.0.0.alpha9)

The version I have (beta3) ..

I have tired several dependencies in the list like

<dependency>

<groupId>org.cytoscape</groupId>

<artifactId>application-api</artifactId>

<version>${cytoscape.api.version}</version>

</dependency>

but the package org.cytoscape.app still isnt there.

I also tried to search maven repositories for CyAppAdaptor... and nothing comes up

Omar

[Scooter Morris]

Those are all bundles.  CyAppAdapter is provided by app-api and CySwingAppAdapter (which extends CyAppAdapter with some Swing GUI-specific methods) is provided by swing-app-api.  So all of the bundles are starting as appropriate.  So, in your pom.xml, you need to depend on org.cytoscape.app:

<dependency>
    <groupId>org.cytoscape</groupId>
    <artifactId>app-api</artifactId>

    <version>${cytoscape.api.version}</version>
</dependency>

-- scooter

To view this discussion on the web visit https://groups.google.com/d/msg/cytoscape-discuss/-/VwKsbiZL8joJ.