bppsuite: bppMixedLikelihoods

[Laurent Guéguen]

Hi folks,

a new program in bppSuite, called bppmixedlikelihoods, is available. It computes site per site
log-likelihoods of submodels inside a mixed model. If submodels are defined on the basis of a
parameter following a discrete distribution, the site per site average a posteriori value of this
parameter is also computed.

Cheers,
L

[Julien Yann Dutheil]

Hi Laurent,

Thanks a lot for this! A question to be sure I am understanding correctly: in bppML, there is currently an option that output the logL, the rate with maximum probability and the average posterior rate for each site for RAS models. Is the new program kind of a generalization of this for any mixed model?

All the best,

Julien.

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Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 530

§ Max Planck Institute for Terrestrial Microbiology
Department of Organismic Interactions
Marburg -- GERMANY

§ Intitute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE

[Laurent Guéguen]

Hi Julien,

up to now, it is complementary, since it returns the average posterior value of a parameter that is modeled by a distribution,
but this summed on all the rates. But in a very next future when all the mixtures (rates and parameters) will be considered
in a same way, it is a generalization indeed.

L