Matthew Speir
UCSC Cell Browser, Quality Assurance and Data Wrangler
Human Cell Atlas, User Experience Researcher
UCSC Genome Browser, User Support
UC Santa Cruz Genomics Institute
Revealing life’s code.
--
---
You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Mirror-Specific Support" group.
To unsubscribe from this group and stop receiving emails from it, send an email to genome-mirro...@soe.ucsc.edu.
To view this discussion on the web visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome-mirror/241bf657.4047b.17d7ec0356b.Coremail.2017326660216%40whu.edu.cn.
“handleRefreshState: error from server: Mysql error during sqlTableExists(defaultKnown) 2006: MySQL server has gone away”.
Moreover, I downloaded all files of gbdb and MySQL of caeJap1
from the official website of UCSC and put them in / gbdb and / var / lib
/ MySQL of Ubuntu18.04 system respectively, but there was still an error,
"couldn't connect to database caejap1 on genome-mysql.soe.ucsc.edu as
genome
Unknown MySQL server host 'genome-mysql. soe. ucsc. Edu '(- 2) ".
I don't know why. I hope to get your help. Thank you very much.
-----原始邮件-----
发件人:"Matthew Speir" <msp...@ucsc.edu>
发送时间:2021-12-09 03:38:30 (星期四)
收件人: "宋日进" <201732...@whu.edu.cn>
抄送: genome-mirror <genome...@soe.ucsc.edu>
主题: Re: [genome-mirror] student from Wuhan University
Hello,
Thanks for using the Genome Browser and writing to our support team. We apologize for the delay in our reply.
It appears that your MySQL server is not functioning correctly. You may want to reinstall MySQL or consider switching to a GBIB installation.
You may also want to check that your genome of interest is not in our system, which now includes many GenBank and RefSeq assemblies. You can search for it here:
The easiest way to work within non-reference genomes is by visualizing your custom genome through an assembly hub. No local installation is needed. Is there any reason this does not work for you?
https://genome.ucsc.edu/goldenpath/help/hubQuickStartAssembly.html
I hope this was helpful. If you have any more questions, please reply-all to gen...@soe.ucsc.edu. All messages sent to that address are publicly archived. If your question includes sensitive data, please reply-all to genom...@soe.ucsc.edu.
All the best,
Daniel Schmelter
UCSC Genome Browser
To view this discussion on the web visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome-mirror/5bea5ec3.4ec14.17db254ecdb.Coremail.songiljin%40whu.edu.cn.