Apollo 2.6.3 released

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Nathan Dunn

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Mar 2, 2021, 6:24:55 PM3/2/21
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Apollo 2.6.3 has been released:  https://github.com/GMOD/Apollo/releases/tag/2.6.3



Features

  • Fix empty attribute list in annotation panel 2552.
  • Added ability to use posts to sequence methods 2555.
  • Added system info web service 2557.
  • Add "merged from" comment to merged in transcript and gene 2567.
  • Added support for "obsolete", and partials in the interface for GFF3s 2573.
  • Allow overlap filter to be configurable 2582.

Bug Fixes:

  • Bad coordinate value in genomic element details screen in annotator panel 2559.
  • Web services indicated user had no organism permissions when checking the login 2554.
  • Vcf reads as ISO-8859-1 instead of UTF-8 from reader mangling some symbols. 2498.
  • Added security fixes for web services. 25642587.
  • In some cases web services tries to create a preference which results in incorrect results 2580.
  • For the track service, the overlap filter is too restrictive when converting NCList to JSON 2586.

Infrastructure Changes

  • Removed travis in favor of GitHub Actions 2546.

Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on quay.io and docker hub:

https://quay.io/repository/gmod/apollo?tab=builds
https://hub.docker.com/r/gmod/apollo
Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here:
https://genomearchitect.readthedocs.io/en/latest/Migration.html

Report issues if found.
Active mailing list (apo...@lbl.gov) and google group.
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