apollo

Hi, Another solution is to run agat_convert_sp_gxf2gxf.pl from AGAT (https://github.com/NBISweden/

Sorry, clicked around and sent this too early. Any idea why this is happening? I've tried without

I would start there: https://github.com/galaxy-genome-annotation/python-apollo It just uses the

Great! I also found the config.groovy and realized that the google analytic setting can be inserted

We tried the fix documented in https://github.com/GMOD/Apollo/pull/2642 , but it did not work for us.

I'd dump your MySQL database into a PostgreSQL database. I don't thing mysql is explicitly

Hi Alyssa, Are you able to see the server side logs perhaps? It might have some clues. Might require

Hi Michael Sorry for delay in reply, definitely feel free to let us know if you have any updates or

I guess that's the organism list, but not sure if that's what's slow for Marc when doing

Hi all, As an admin, I can search for people annotations by name and status. For example: However, as

Hi Colin, Thank you so much for your reply! We will try this and I'll report back on the results.

Hi Michał, The database format didn't change between 2.6.6 and 2.7.0, so you can load the

It should work. NAthan On Aug 23, 2023, at 8:54 PM, Michael Thang <m.t...@qfab.org> wrote: Hi

Hi Michal, If you are from, or working with, an Australian-based research institute we have created

Hi there, this was also mentioned here. https://github.com/GMOD/Apollo/issues/2660 If you can add

Hi Colin, Thanks for the advice, the BEDTabix track upload worked great! Antonin Le vendredi 14 avril

Hello, I've been testing Apollo for use in collaborative manual annotation of herpesvirus genomes

I would raise an issue here: https://github.com/galaxy-genome-annotation/python-apollo I would let

Apollo 2.7.0 has been released: https://github.com/GMOD/Apollo/releases/tag/2.7.0 Features Add info

Begin forwarded message: From: Xiaomei Li <xiaome...@gmail.com> Subject: Re: [apollo]

So there are 2 issues: 1 - you have to pass in unique name as a JSON object within a JSON array (

Hi All, I'd like to understand what a successful annotation effort in Apollo looks like to better

How big? Might be that it is an excess of a web request and you'll need to configure it manually

I would rename the 2 keys so it overrides (ie, blat_nuc and blat_prot instead of blast_nuc and

Maybe set the type to Alignments2? (Canvas). Nathan > Begin forwarded message: > > From:

Hi all, It worked the whole time, but it took a long time. I solved the problem by compressing and

I think any of those should work, I'm just testing a local installation on my M1 iMac, thanks

Please feel free to retweet (hope I did it right): https://twitter.com/precogincog/status/

Disk space within the container might be another culprit as well as what the docker image itself

I would download and install JBrowse 1 and generate the names with that perl script and then point