Apollo 2.6.5 released

[Garrett Stevens]

Apollo 2.6.5 has been released: https://github.com/GMOD/Apollo/releases/tag/2.6.5

This release contains a fix that caused users to not be able to build due to a change to the Grails servers. See grails/grails-core#11825. If you are not able to upgrade Apollo to this version but still are experiencing build failures, you can update your BuildConfig.groovy file as in this PR: 2624.

Features

• Added method to upload bulk functional annotations from JSON in the interface. 2617, 2618
• Added a "topLevel" option to the "getFeatures" web services endpoint that causes the endpoint to return top-level (e.g. gene) features. 2616

Bug Fixes

• Removed deprecation from SequenceController.sequenceByName. 2619
• Fix contextual menu for blastview tracks. Thanks @abretaud. 2621
• Make Python libraries installed globally in Docker image. 2622
• Update mavenRepo to fix error grails server error during build, see grails/grails-core#11825. 2624

Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on docker hub: https://hub.docker.com/r/gmod/apollo

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide to upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html

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