I am presently making the switch from Matlab to Python (it has been great until now). Unfortunately, I am now in over my head: I want to implement some simple nonlinear dynamical systems (with some bifurcation analysis). I can do the numerical simulations easily (if slowly) in Matlab, but really want to start doing it in Python for a presentation in two weeks, and want to use PyDSTool (which, from the outside, looks fantastic).
Has anyone written up anything on getting PyDSTool working
in the Anaconda environment in Windows 7?
Unfortunately, I am not a hacker, and my initial attempts to get PyDSTool working
have yielded a fail. I have been (probably incorrectly) following the
instructions here:
http://www2.gsu.edu/~matrhc/GettingStarted.html#head-607f3c0ee247904b85ccb5001f8b0a7ff13392f6
But frankly I am such a noob I am not sure of all the dependencies, or even if
my Python can see my c compiler. I feel I am lost in a labyrinth and will spend
the next two weeks in installation hell, which I unfortunately don't have time
for right now (but I feel like it's giving in to just do it the easy way in
Matlab). Any help anyone can give me I would greatly appreciate it.
So far I have extracted the PyDSTool folder to C:, added PyDSTool to my Python
path, and then (from within the test directory in PyDSTool) I ran the test in
the iPython shell with:
run run_all_tests.py
And every test failed.
System info: I am on Windows 7 with Anaconda 1.9.1 (using
Spyder/ipython), and use mingw.
I almost hate to say it, but I can switch to Ubuntu, which I already have installed, if I
absolutely must, to get this working quickly (though frankly I prefer Windows 7 to Ubuntu).
Cross-posted at:
Had a quick peek to see if I could knock out a quick conda package for "PyDSTool"...
Upon reviewing it: oh my. That... that is not a straight forward package. The lack of a standard setup.py adds a pretty big cognitive burden.
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