You cannot post messages because only members can post, and you are not currently a member.
Description:
This is a list for asking questions about and getting help with Cytoscape (http://cytoscape.org). We encourage ALL users to post ANY questions they might have related to the use of Cytoscape.
|
|
|
error
|
| |
hi, when i enter web services and enter the pathway details and show interaction of particular gene.., then error comes.."see log for details" wht should i do ?
|
|
|
Broken link for Cytoscape tutorials?
|
| |
Hi folks,
Greetings from Argentina, where I'm on sabbatical for a couple of
months... I just received a lovely, polite email from someone who
apologized for contacting me while I'm away, but was desperately
trying to get to the Cytoscape tutorials. At the moment, the link
from cytoscape.org appears to be broken. Would someone do the honors... more »
|
|
|
Problem with the online tutorials
|
| |
Hi, I'm a PhD student, currently learning to use cytoscape but I have
a problem with the online tutorials.
Everytime I try to open the tutorials I receive the following message
"
Internal Server Error
The server encountered an internal error or misconfiguration and was
unable to complete your request.... more »
|
|
|
online tutorials problem
|
| |
Dear Sir, I'm a PhD student, currently learning to use cytoscape but I have a problem with the online tutorials. I receive the following message " Internal Server ErrorThe server encountered an internal error or misconfiguration and was unable to complete your request. Please contact the server administrator, or webmaster and inform them of the time the error occurred, and anything you might have done that may have caused the error.... more »
|
|
|
opening cytoscape
|
| |
Dear cytoscape users , I’m not new in cytoscape, but I got several troubles 1) while opening the 2.6.3 version: The first use is ok, but when I want to re-open cytoscape, then I’m unable to do so and the following error message appears (I upgraded the java version, but nothing changed): java.lang.NullPointerException... more »
|
|
|
Need Help With Look and Feel Setting Affecting Network Viewer
|
| |
Can anyone point me at any specifics for look-and-feel settings that might affect the birds eye viewer and network viewer? We are using Cytoscape inside another application that has its own look and feel (aquathemepack) and Cytoscape resets this application's look and feel. However, when I attempt to comment out the call to CyMain.setupLookAndFeel(), then nothing will show for the network view and birds eye viewer under aquathemepack. setupLookAndFeel() has a lot of esoteric settings, so any help would be greatly appreciated!... more »
|
|
|
filters need to be reset?
|
| |
Hello,
I'm using the (new) filter controls to create a filter based on other
filters--perhaps 4 steps in all. Any time I change the network, the
final filter results are incorrect. I either need to reload the
network or go through and rebuilt each component filter.
Is this typical behavior?... more »
|
|
|
how to use 'attribute batch editor'
|
| |
Hello,there may be something wrong with my 'attribute batch editor'.I
selected all source nodes,clicked on 'attribute batch editor'and
selected 'set' in the first blanket but I found no attribute name
except for 'canonical name' in the second blanket.What's the reason?I
want to edit the colour of all selected notes,what shoud I do?... more »
|
|
|
Cytoscape Selection in Model versus View
|
| |
What does selection mean for a CyNode versus a CyNodeView in Cytoscape 2.X? I would think that selection is strictly a view-related activity, but after looking at the implementation this doesn't appear to be the case. Selecting a CyNode via something like CyNetwork.setSelectedNodeState () keeps its own state of selected nodes (in cytoscape.data.SelectFilter) and will fire an event that will actually select any corresponding CyNodeViews for a given selected CyNode. Then there is just selecting via CyNodeView.setSelected()). When should we be selecting the CyNodes versus their views? For my own application, I really only want the view selected, so that if there was another CyNetwork that was being displayed and showing the same CyNode, I would only want the node selected in a specific CyNetworkView. So, I assume I should use the CyNodeView.setSelected()?... more »
|
|
|
|
