Date: Thu, 6 Sep 2012 21:36:50 -0700 (PDT)
From: Omar Wagih <omarwa...@gmail.com>
To: cytoscape-discuss@googlegroups.com
Cc: Omar Wagih <omarwa...@gmail.com>
Message-Id: <a3669ca9-9362-4a7c-85e1-eb19d74ef26f@googlegroups.com>
In-Reply-To: <504850A9.20005@cgl.ucsf.edu>
References: <41bd2e06-4113-4e5a-985b-90643563af7d@googlegroups.com>
<504850A9.20005@cgl.ucsf.edu>
Subject: Re: [Cytoscape-discuss] Getting current network
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CyAppAdapter does not exist in the release I have...
Did a grep on "app" in the karaf terminal:
Cytoscape 3.0.0-M5> list | grep app
[ 87] [Active ] [ ] [ 104] Molecular interaction cluster
(OSGi wrapped version w/dependencies) (1.6)
[ 97] [Active ] [ ] [ 110] Cytoscape Swing Application API
(swing-application-api) (3.0.0.beta2)
[ 99] [Active ] [ ] [ 110] Cytoscape App API (app-api)
(3.0.0.beta2)
[ 100] [Active ] [ ] [ 110] Cytoscape Swing App API
(swing-app-api) (3.0.0.beta2)
[ 109] [Active ] [ ] [ 110] Cytoscape Application API
(application-api) (3.0.0.beta2)
[ 128] [Active ] [ ] [ 135] Cytoscape Application Impl
(application-impl) (3.0.0.alpha9)
[ 135] [Active ] [ ] [ 160] Cytoscape Swing Application
Impl (swing-application-impl) (3.0.0.alpha9)
[ 162] [Active ] [ ] [ 175] Cytoscape App Impl (app-impl)
(3.0.0.alpha9)
The version I have (beta3) ..
I have tired several dependencies in the list like
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>application-api</artifactId>
<version>${cytoscape.api.version}</version>
</dependency>
but the package org.cytoscape.app still isnt there.
I also tried to search maven repositories for CyAppAdaptor... and nothing
comes up
Omar
On Thursday, 6 September 2012 03:28:46 UTC-4, Scooter Morris wrote:
>
> On 09/05/2012 11:29 PM, Omar Wagih wrote:
>
> How can you get the current network being looked at?
> Online says use this through the CyAppAdapter, but this does not seem to
> be available in the most recent release. Is there something I'm missing?
>
> Cheers
> --
> You received this message because you are subscribed to the Google Groups
> "cytoscape-discuss" group.
> To view this discussion on the web visit
> https://groups.google.com/d/msg/cytoscape-discuss/-/3EfTmmrtO9UJ.
> To post to this group, send email to cytoscap...@googlegroups.com<javascript:>
> .
> To unsubscribe from this group, send email to
> cytoscape-disc...@googlegroups.com <javascript:>.
> For more options, visit this group at
> http://groups.google.com/group/cytoscape-discuss?hl=en.
>
> Hi Omar,
> The current network is maintained by the CyApplicationManager. So,
> from your CyAppAdapter:
>
> CyNetwork currentNetwork =
> appAdapter.getCyApplicationManager().getCurrentNetwork();
>
> -- scooter
>
>
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CyAppAdapter does not exist in the release I have... <div><br></div><d=
iv>Did a grep on "app" in the karaf terminal:</div><div><div>Cytoscape 3.0.=
0-M5> list | grep app</div><div>[ 87] [Active =
] [ ] [ 104] Molecular inter=
action cluster (OSGi wrapped version w/dependencies) (1.6)</div><div>[ &nbs=
p;97] [Active ] [ ] =
[ 110] Cytoscape Swing Application API (swing-application-api) (3.0.0=
.beta2)</div><div>[ 99] [Active ] [  =
; ] [ 110] Cytoscape App API (app-api) (3.0.0.bet=
a2)</div><div>[ 100] [Active ] [ =
] [ 110] Cytoscape Swing App API (swing-app-api) (3.0.0.=
beta2)</div><div>[ 109] [Active ] [ &nbs=
p; ] [ 110] Cytoscape Application API (application-api) =
(3.0.0.beta2)</div><div>[ 128] [Active ] [ &nbs=
p; ] [ 135] Cytoscape Application Impl (applicati=
on-impl) (3.0.0.alpha9)</div><div>[ 135] [Active ] [ &=
nbsp; ] [ 160] Cytoscape Swing Application=
Impl (swing-application-impl) (3.0.0.alpha9)</div><div>[ 162] [Active &nbs=
p; ] [ ] [ 175] Cytos=
cape App Impl (app-impl) (3.0.0.alpha9)</div></div><div><br></div><div>The =
version I have (beta3) ..</div><div>I have tired several dependencies in th=
e list like<br><br><div><dependency></div><div><groupId>org.cyt=
oscape</groupId></div><div><artifactId>application-api</arti=
factId></div><div><version>${cytoscape.api.version}</version>=
;</div><div></dependency></div><div><br></div><div>but the package or=
g.cytoscape.app still isnt there.<br><br>I also tried to search maven repos=
itories for CyAppAdaptor... and nothing comes up</div><div><br></div><div>O=
mar</div><br>On Thursday, 6 September 2012 03:28:46 UTC-4, Scooter Morris =
wrote:<blockquote class=3D"gmail_quote" style=3D"margin: 0;margin-left: 0.8=
ex;border-left: 1px #ccc solid;padding-left: 1ex;">
=20
=20
=20
<div bgcolor=3D"#FFFFFF" text=3D"#000000">
<div>On 09/05/2012 11:29 PM, Omar Wagih
wrote:<br>
</div>
<blockquote type=3D"cite">How can you get the current network being loo=
ked at?
<div>Online says use this through the <span style=3D"color:rgb(0=
,0,0);white-space:pre-wrap">CyAppAdapter, but this does
not seem to be available in the most recent release. Is there
something I'm missing? </span></div>
<div><span style=3D"color:rgb(0,0,0);white-space:pre-wrap"><br>
</span></div>
<div><span style=3D"color:rgb(0,0,0);white-space:pre-wrap">Cheers</sp=
an></div>
-- <br>
You received this message because you are subscribed to the Google
Groups "cytoscape-discuss" group.<br>
To view this discussion on the web visit <a href=3D"https://groups.go=
ogle.com/d/msg/cytoscape-discuss/-/3EfTmmrtO9UJ" target=3D"_blank">https://=
groups.google.com/d/<wbr>msg/cytoscape-discuss/-/<wbr>3EfTmmrtO9UJ</a>.<br>
To post to this group, send email to
<a href=3D"javascript:" target=3D"_blank" gdf-obfuscated-mailto=3D"mT=
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To unsubscribe from this group, send email to
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For more options, visit this group at
<a href=3D"http://groups.google.com/group/cytoscape-discuss?hl=3Den" =
target=3D"_blank">http://groups.google.com/<wbr>group/cytoscape-discuss?hl=
=3Den</a>.<br>
</blockquote>
Hi Omar,<br>
The current network is maintained by the CyApplicati=
onManager.
So, from your CyAppAdapter:<br>
<br>
CyNetwork currentNetwork =3D appAdapter.<wbr>getCyAp=
plicationManager().<wbr>getCurrentNetwork();<br>
<br>
-- scooter<br>
<br>
</div>
</blockquote></div>
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Message from discussion Getting current network
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