txCdsPredict

[常磊]

 hi

I want to use txCdsPredict score to determine whether my assembly transcrits is protein-coding or non-coding, but I could not found the txCdsPredict in UCSC. Can you tell me how to find it and use it.

 Thank you sincerely.
LEI CHANG

 

[Luvina Guruvadoo]

Hello Lei Chang,

Thank you for your question. You may download txCdsPredict and our other utilities here:
http://hgdownload.soe.ucsc.edu/admin/exe/

Also see this archived question:
https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/RdcLH3ykrAU/DXQdW3FuAwAJ

You can run txCdsPredictwith no arguments to see the usage statement and options.

If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Regards,

Luvina

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Luvina Guruvadoo
UCSC Genome Browser
http://genome.ucsc.edu

 

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