spIsoNet

Hi Rajiv, It seems that you do not have sufficient GPU memory. Please consider setting the --

Hi Danielle, You need halfmaps and a mask for postprocessing in Relion. I have not tried but I think

Hi Udipan, How about changing A.mrc and B.mrc to A_half1.mrc and B_half2.mrc respectively. On Mon,

Thanks! For now, I am setting the ISONET_START_HEALPIX=8 for the misalignment correction and then

Hi Guoqiang, This is a great question whether it is legit to use low resolution alphafold structure

Hello Yuntao, We are trying to run misalignment correction trough SBgrid on our HPC. By following

Hey, I am trying to run misalignment correction on our HPC. I submit job with qsub using Relion GUI,

Thanks, That seemed to work! On Wednesday, July 31, 2024 at 1:18:03 PM UTC-7 yun...@g.ucla.edu wrote:

Hi Ryan, I believe the "No protocol specified" is not relevant to spIsoNet. Please see here

Hi Chunyan, I guess this probably happens because spIsoNet requires using a mask in relion refinement

Hi yuntao, Thank you very much for your suggestions, and for developing the software spIsoNet. It has

It does! Thanks again! On Tuesday, May 21, 2024 at 12:05:16 AM UTC+2 yun...@g.ucla.edu wrote: Hi

Hi all, I think there are a few inquiries about whether spIsoNet is compatible with RELION5. A recent

Hi Yuntao, Thanks a lot for the prompt feedback! That all makes sense! I would also like to hear the

Thank you, Yuntao. This is very useful and I'll try to follow these steps. Best, Vitor Hugo

Hi all, I am having the same issue. Has anyone found a solution yet? Best, Julian Bryce Brownfield

Thanks all! I ended up fixing this error by installing the gcc_linux-64 package within conda: conda

Hi Rajiv, We currently do not have chance to thoroughly test how spIsoNet interact with RELION5, or

Hi, I encountered the same error with RELION 4.0.1, but the problem was fixed by using the "--

Hi Dong-Hua, This error should not affect the final results. To compare the before and after