Dear Thomas,
I installed the superpathway plugin via the Cytoscape.
The consol output after using superpathway plugin with WP656:
mezhoud@sunny-deb:~$ Cytoscape
cytoscape.CytoscapeInit[INFO]: CytoscapeInit static initialization
cytoscape.CytoscapeInit[INFO]: Log information can now be found in the
Help->Error Console menu
CommonAttributesPlugin constructor v1
[ 37,469] Info: Searching
org.pathvisio.cytoscape.superpathways.SuperpathwaysClient
$FindPathwaysByTextParameters@7ae165
Superpathways!
Superpathways-run!
After clicking 'Find Related Pathways' button!
[ 47,154] Trace: Build JDOM tree
[ 47,185] Info: Recognized format [Namespace: prefix "" is mapped
to URI "
http://genmapp.org/GPML/2008a"]
[ 47,186] Trace: Start Validation
[ 47,346] Info: Document is valid according to the xml schema
definition 'GPML.xsd'
[ 47,346] Trace: Copy map elements
[ 47,368] Trace: Refreshing biopax
[ 47,368] Trace: Biopax element found
[ 47,377] Trace: End copying map elements
#################################### Now I selected WP656 and
specify the nomber of sharing nodes between 3 and 20
Nodes################
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
S:Q80ZG6
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
Error: Error while searching candidate pathways
java.lang.NullPointerException: null
java.lang.NullPointerException
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:667)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
EnRn:ENSRNOG00000018770
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
S:Q80ZG6
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
EnRn:ENSRNOG00000018770
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
S:Q80ZG6
Error: Unable to find the candidate pathways due to the
RemoteException
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
AxisFault
faultCode: {
http://schemas.xmlsoap.org/soap/envelope/}Receiver
faultSubcode:
faultString: exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
faultActor:
faultNode:
faultDetail:
{
http://xml.apache.org/axis/}stackTrace:exception 'Exception' with
message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which
prevented it from fulfilling the request</h3><p>You can
get technical details <a href="
http://www.w3.org/Protocols/
rfc2616/rfc2616-sec10.html#sec10.5.1">here</
a>.<br>
Please continue your visit at our <a href="/">home
page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
{
http://xml.apache.org/axis/}hostname:sunny-deb
exception 'Exception' with message '<html>
<head>
<title>Status page</title>
</head>
<body>
<h3>The server encountered an unexpected condition which prevented it
from fulfilling the request</h3><p>You can get technical details <a
href="
http://www.w3.org/Protocols/rfc2616/rfc2616-
sec10.html#sec10.5.1">here</a>.<br>
Please continue your visit at our <a href="/">home page</a>.
</p>
</body>
</html>
' in /var/www/wikipathways/wpi/search.php:47
Stack trace:
#0 /var/www/wikipathways/wpi/search.php(116):
IndexClient::doQuery('
http://137.120....')
#1 /var/www/wikipathways/wpi/search.php(215):
IndexClient::queryXrefs(Array, Array)
#2 /var/www/wikipathways/wpi/webservice/webservice.php(451):
PathwayIndex::searchByXref(Array, true)
#3 [internal function]: findPathwaysByXref()
#4 /usr/lib/php5/20060613+lfs/wsf_c/scripts/dynamic_invocation/
wsf_wsdl_service.php(226): call_user_func_array('findPathwaysByX...',
Array)
#5 wsf_wsdl.php(702): wsf_serivce_invoke_function(Object(DOMElement),
'findPathwaysByX...', NULL, NULL, Object(DOMElement), NULL, Array,
false, Array, Array)
#6 [internal function]: wsf_wsdl_process_in_msg(Array)
#7 /var/www/wikipathways/wpi/webservice/webservice.php(140): WSService-
>reply()
#8 {main}
at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:
222)
at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:
129)
at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:
1087)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:
601)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:
1782)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2938)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:
648)
at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:
140)
at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:
511)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
808)
at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:
737)
at
com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:
119)
at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:
1205)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl
$JAXPSAXParser.parse(SAXParserImpl.java:522)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:
227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:
62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at
org.pathvisio.wikipathways.webservice.WikiPathwaysSOAPBindingStub.findPathwaysByXref(WikiPathwaysSOAPBindingStub.java:
523)
at
org.pathvisio.wikipathways.WikiPathwaysClient.findPathwaysByXref(WikiPathwaysClient.java:
308)
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:634)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
Error: Error while searching candidate pathways
java.lang.NullPointerException: null
java.lang.NullPointerException
at org.pathvisio.cytoscape.superpathways.FindRelatedPwsDialog
$searchSharingNodePwsTask.run(FindRelatedPwsDialog.java:667)
at cytoscape.task.util.TaskWrapper.run(TaskManager.java:160)
On Jul 7, 11:14 am, Thomas Kelder <
thomaskel...@gmail.com> wrote:
> That might indeed make a difference, but the nullpointer exception
> shouldn't happen anyway. Karim, I see you already created a trac
> ticket for this problem, I added a reference to this thread and I'll
> try to replicate the issue. What might help is if you could attach the
> console output (what you see in the console after you run
> ./cytoscape.sh and try to use the plugin) to the ticket as well.
>
> Thanks,
> Thomas
>
> On Tue, Jul 6, 2010 at 11:05 PM, Alexander Pico
>
> <
ap...@gladstone.ucsf.edu> wrote:
> > One minor point that would make a big difference in running through the
> > example: The example uses WP656, not WP565.
>
> > - Alex
>