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Andreas Bartsch

6/2/24

tarquin on ubuntu 22.04

Hi, I am trying to install tarquin on a ubuntu 22.04 system but when I want to run the tarquingui I

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tarquin on ubuntu 22.04

Hi, I am trying to install tarquin on a ubuntu 22.04 system but when I want to run the tarquingui I

6/2/24

Wu Chen, harshal patel3

3/22/24

optimize fit: residual issue

Dear Wu, Please try Initial beta 500, 1000, 1500 &2000 and see if it helps. Best wishes HJP On

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optimize fit: residual issue

Dear Wu, Please try Initial beta 500, 1000, 1500 &2000 and see if it helps. Best wishes HJP On

3/22/24

7/26/22

Dear All, Hi, I get water FWHM a negative number while analyzing multi voxel MRS data( GE pfile) can

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Dear All, Hi, I get water FWHM a negative number while analyzing multi voxel MRS data( GE pfile) can

7/26/22

fbri...@gmail.com, … Neda Naderi24

7/18/22

Relaxation time correction

Thank you very much Paul, ..what about 55550 and the estimated number with my parameters??... On

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Relaxation time correction

Thank you very much Paul, ..what about 55550 and the estimated number with my parameters??... On

7/18/22

7/18/22

Hi, In tarquin, preproccessing part we have two options: zero fill k space factor and k-space filter.

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Hi, In tarquin, preproccessing part we have two options: zero fill k space factor and k-space filter.

7/18/22

Lotfi Kesraoui, … Neda Naderi21

7/18/22

Load T1 in Tarquin

Dear Martin, Hi I got the same problem as Samira's (unable to register MRSI grid on MR image) in

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Load T1 in Tarquin

Dear Martin, Hi I got the same problem as Samira's (unable to register MRSI grid on MR image) in

7/18/22

6/29/22

ima. and rda. files in MRS

Dear Tarquin Community ! Greetings. I am Alieh Ahdi, Phd student working on Parkinson's disease

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ima. and rda. files in MRS

Dear Tarquin Community ! Greetings. I am Alieh Ahdi, Phd student working on Parkinson's disease

6/29/22

Pom, Mark Mikkelsen2

5/24/22

1.5T and 3T MRS

Hi Pom, You could use a statistical normalization approach such as Z-scoring or ComBat (https://doi.

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1.5T and 3T MRS

Hi Pom, You could use a statistical normalization approach such as Z-scoring or ComBat (https://doi.

5/24/22

5/18/22

very poor fit and auto reference?

Hello Everyone. I'm wondering if anyone has thoughts about why the QuickFit in one brain spectrum

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very poor fit and auto reference?

Hello Everyone. I'm wondering if anyone has thoughts about why the QuickFit in one brain spectrum

5/18/22

Paul, … Paul Mullins8

3/31/22

Error reading SPAR files in command line on Linux

Cheers Martin, will get to it on Monday. Hope you are well. Prof Paul Mullins Ysgol Gwyddorau Dynol

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Error reading SPAR files in command line on Linux

Cheers Martin, will get to it on Monday. Hope you are well. Prof Paul Mullins Ysgol Gwyddorau Dynol

3/31/22

harshal patel, Martin Wilson4

1/13/22

Parameter setting for 7T 1H MRS datasets

Hi Harshal, I was assuming that TM < TE, but I was mistaken as this isn't the case for STEAM.

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Parameter setting for 7T 1H MRS datasets

Hi Harshal, I was assuming that TM < TE, but I was mistaken as this isn't the case for STEAM.

1/13/22

Pom, Martin Wilson3

8/10/21

Latest TARQUIN version

Thanks, Martin Pom On Mon, Aug 9, 2021 at 21:51 Martin Wilson <martin.w...@gmail.com>

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Latest TARQUIN version

Thanks, Martin Pom On Mon, Aug 9, 2021 at 21:51 Martin Wilson <martin.w...@gmail.com>

8/10/21

rbf...@gmail.com, Martin Wilson2

8/10/21

Leucine and Isoleucine

Hi Rob, Sorry, I'm not aware of any published values for this. You need chemical shifts and j-

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Leucine and Isoleucine

Hi Rob, Sorry, I'm not aware of any published values for this. You need chemical shifts and j-

8/10/21

researc...@gmail.com, … Nick Bolo24

6/7/21

GE File Not Being Read by Tarquin

Hi Alex, Thanks for providing the fix (tarquin.redist.macos.10.14.tar.gz), which I've just

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GE File Not Being Read by Tarquin

Hi Alex, Thanks for providing the fix (tarquin.redist.macos.10.14.tar.gz), which I've just

6/7/21

Rachael Franklin, Martin Wilson2

4/28/21

Spectral Noise region

Hi Rachael, The spectrum is split into segments of 200 points and the noise is calculated for each.

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Spectral Noise region

Hi Rachael, The spectrum is split into segments of 200 points and the noise is calculated for each.

4/28/21

raj...@gmail.com

3/26/21

MEGA PRESS- Siemens 3T

Hi Martin, I have recently collected the MEGA-PRESS GABA data from the Siemens 3T SKyra scanner. I

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MEGA PRESS- Siemens 3T

Hi Martin, I have recently collected the MEGA-PRESS GABA data from the Siemens 3T SKyra scanner. I

3/26/21

Khaoula Bouazizi

11/9/20

How to import 1D vector data to Tarquin?

Hello, I would like to analyze spectroscopic data coming from TNMR analyzer (.tnt files). They are

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How to import 1D vector data to Tarquin?

Hello, I would like to analyze spectroscopic data coming from TNMR analyzer (.tnt files). They are

11/9/20

11/2/20

Prostate MRSI: Citrate basis set

Dear all, I got 3D MRSI prostate datasets acquired at 3T (Siemens). While the vendor provides some

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Prostate MRSI: Citrate basis set

Dear all, I got 3D MRSI prostate datasets acquired at 3T (Siemens). While the vendor provides some

11/2/20

Sai Manohar, Ben Rowland4

7/8/20

Metabolite Quantification using Siemens csi_30 and 135 without water unsupressed file

Hi Dr. Benjamin Rowland, Thanks a lot for the suggestion. I got better signal from the central voxels

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Metabolite Quantification using Siemens csi_30 and 135 without water unsupressed file

Hi Dr. Benjamin Rowland, Thanks a lot for the suggestion. I got better signal from the central voxels

7/8/20

6/15/20

Metabolite Quantification _ Siemens csi_30 and 135 without water unsupressed file

Dear Tarquin Community ! Greetings. I am Sai Manohar , PhD student working on Huntington's

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Metabolite Quantification _ Siemens csi_30 and 135 without water unsupressed file

Dear Tarquin Community ! Greetings. I am Sai Manohar , PhD student working on Huntington's

6/15/20

Bartosz Kossowski2

5/27/20

Age related changes in unsuppressed water signal

It looks like I need to answer myself :) White matter water concentration of 35880M seems to be taken

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Age related changes in unsuppressed water signal

It looks like I need to answer myself :) White matter water concentration of 35880M seems to be taken

5/27/20

Bartosz Kossowski, … Helge Zöllner14

5/14/20

Support needed for GE MEGA-PRESS spectroscopy

Hi Bartosz, That's a great suggestion. As Osprey's data format is based on the FID-A

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Support needed for GE MEGA-PRESS spectroscopy

Hi Bartosz, That's a great suggestion. As Osprey's data format is based on the FID-A

5/14/20

Aleksandra Szcześniak

5/14/20

Shifting spectrum to have a water on 0 ppm

Dear users, together with my colleague, we are working on estimating the temperature of human brains

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Shifting spectrum to have a water on 0 ppm

Dear users, together with my colleague, we are working on estimating the temperature of human brains

5/14/20

Pom Sailasuta, Mark Mikkelsen3

4/16/20

Thanks, Mark. Pom On Wed, Apr 15, 2020 at 4:25 PM Mark Mikkelsen <mark.mi...@gmail.com>

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Thanks, Mark. Pom On Wed, Apr 15, 2020 at 4:25 PM Mark Mikkelsen <mark.mi...@gmail.com>

4/16/20

Sunitha thakur, jamesg...@gmail.com3

4/2/20

3D GE CSI data conversion to LCModel .raw files

Yes. I used it and it worked! thank you! On Wednesday, October 24, 2018 at 6:26:19 AM UTC-4, jamesg..

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3D GE CSI data conversion to LCModel .raw files

Yes. I used it and it worked! thank you! On Wednesday, October 24, 2018 at 6:26:19 AM UTC-4, jamesg..

4/2/20

Sophie Betka, … Vuong Truong14

2/20/20

Corrections for water attenuation, water concentration, water and metabolites relaxation effects

Dear Paul, I realized that you did not put the #H_M(number of proton that gives rise to the

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Corrections for water attenuation, water concentration, water and metabolites relaxation effects

Dear Paul, I realized that you did not put the #H_M(number of proton that gives rise to the

2/20/20

Tiffany Bell, … Eduardo Gonzalez Toledo3

2/20/20

Hi Tiffany!! How do you download the MRS file from the scanner? The software does not recognize the

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Hi Tiffany!! How do you download the MRS file from the scanner? The software does not recognize the

2/20/20

10/15/19

metabolites in mouse brain

Hello guys, I'm trying to analyze mice brain metabolites concentration using a 7.0 T Bruker

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metabolites in mouse brain

Hello guys, I'm trying to analyze mice brain metabolites concentration using a 7.0 T Bruker

10/15/19

10/15/19

Hello guys, I'm trying to analyze mice brain metabolites concentration using a 7.0 T Bruker

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Hello guys, I'm trying to analyze mice brain metabolites concentration using a 7.0 T Bruker

10/15/19

Jamie Near, Dr., … Surya Gnyawali4

10/11/19

MEGA-PRESS analysis in Tarquin:

Hi Helge Zollner, Do mind helping in changing the y-axis on the intensity vs chemical shift? the

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MEGA-PRESS analysis in Tarquin:

Hi Helge Zollner, Do mind helping in changing the y-axis on the intensity vs chemical shift? the

10/11/19

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