Re: msconvert "Caught unknown exception" while converting Bruker .baf to mzML

[Георгий Арапиди]

Today I tried to convert the data from ABISciex TripleToF 5600 (.wiff format) to mzML with the help of msconvert. I got two different errors:

format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) indexed="true"
outputPath: c:/Inetpub/wwwroot/ISB/data/TripleToF
extension: .mzML
contactFilename: 

filters:
  peakPicking true [1,2]
  
filenames:
  c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1-sec39.wiff
  
processing file: c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1-sec39.wiff
[WiffFileImpl::getSampleCount] error converting System::String to std::string
Error processing file c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1-sec39.wiff

and:

format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) indexed="true"
outputPath: c:/Inetpub/wwwroot/ISB/data/TripleToF
extension: .mzML
contactFilename: 

filters:
  peakPicking true [1,2]
  
filenames:
  c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1_01.wiff
  
processing file: c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1_01.wiff
[WiffFileImpl::getSampleNames] c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1_01.wiff
Error processing file c:/Inetpub/wwwroot/ISB/data/TripleToF/Govorun_K1_01.wiff

The first one is very simmilar to Microsoft Visual C Package error, but I have no idea what does it meen.

I wrote to sup...@proteowizard.org a week ago, but they haven't answered, yet.

So the question is still stands: Has anyone met such an error and how to fix it?

Thank you very much for any kind of help!

Have a Nice Day,

Georgij.