Re: [spctools-discuss] Digest for spctools-discuss@googlegroups.com - 6 Messages in 1 Topic

[Daniel Macedo Lorenzini]

Hi,

Is there a way to import Sequest results from Thermo Proteome Discoverer into TPP?

Thanks,

Daniel

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Daniel Macedo Lorenzini
Pontifícia Universidade Católica do Rio Grande do Sul
Centro de Pesquisas em Biologia Molecular e Funcional.
Av. Ipiranga, 668, Tecnopuc, Prédio 92A
90619-900 - Porto Alegre, RS - Brasil
fones: +55 51 8506 2296
   +55 51 33203629
skype: daniel.macedo.lorenzini

[Natalie Tasman]

I don't know the answer, but you are likely to get more answers if you repost this question with a relevant subject line.

:)

Natalie

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[Angel]

The Proteome Discoverer result file (MSF file) is supported by
Scaffold. Since Scaffold is (for all intents and purposes) a different
implementation of the TPP algorithms that would be your path of least
resistance, but it is a commercial product.

Under the hood, MSF files are based on SQLITE3, so it should be simple
to translate it into pepXML and protXML, but I have not done that item
on my to-do list yet. Anyone else take a stab at this already?

-angel



On Jul 8, 12:02 pm, Daniel Macedo Lorenzini <dmaclo...@gmail.com>
wrote: