Yes, I think what you need is unmanagedSourceDirectories. I have a
project that has java classes in non standard paths as well.
You can do something like this:
> show unmanaged-source-directories
[info] List(/tmp/test/src/main/scala, /tmp/test/src/main/java)
> set unmanagedSourceDirectories in Compile <+= baseDirectory( _ / "research" / "code" / "src" )
[info] Reapplying settings...
[info] Set current project to root (in build file:/tmp/test/)
> show unmanaged-source-directories
[info] List(/tmp/test/src/main/scala, /tmp/test/src/main/java,
/tmp/test/research/code/src)
> compile
[info] Updating...
[info] Done updating.
[success] Total time: 1 s, completed 20-Jun-2011 9:31:02 PM
>
Hope this helps,
-Fred
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