R> require(sp) Loading required package: sp R> devtools::install_github("rstudio/leaflet") Downloading github repo rstudio/leaflet@master Installing leaflet Installing dependencies for leaflet: raster Installing package into ‘/home/rstudio-server/R/x86_64-redhat-linux-gnu-library/3.1’ (as ‘lib’ is unspecified) trying URL 'http://cran.ms.unimelb.edu.au/src/contrib/raster_2.3-40.tar.gz' Content type 'application/x-gzip' length 1022598 bytes (998 KB) opened URL ================================================== downloaded 998 KB Loading required package: MASS Loading required package: grDevices Loading required package: graphics Loading required package: stats Loading required package: utils * installing *source* package ‘raster’ ... ** package ‘raster’ successfully unpacked and MD5 sums checked ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c aggregate.c -o aggregate.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c aggregate_get.c -o aggregate_get.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c broom.c -o broom.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c clamp.c -o clamp.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c direction.c -o direction.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dist_util.c -o dist_util.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c distance.c -o distance.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c edge.c -o edge.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c focal_fun.c -o focal_fun.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c focal_get.c -o focal_get.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c focal_sum.c -o focal_sum.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c intersect.c -o intersect.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c layerize.c -o layerize.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c minmax.c -o minmax.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c mode.c -o mode.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c pointinpoly.c -o pointinpoly.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c rasterize.c -o rasterize.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c reclass.c -o reclass.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c solar.c -o solar.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c terrain.c -o terrain.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c util.c -o util.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c wirth.c -o wirth.o gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o raster.so aggregate.o aggregate_get.o broom.o clamp.o direction.o dist_util.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o intersect.o layerize.o minmax.o mode.o pointinpoly.o rasterize.o reclass.o solar.o terrain.o util.o wirth.o -L/usr/lib64/R/lib -lR installing to /home/rstudio-server/R/x86_64-redhat-linux-gnu-library/3.1/raster/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘aggregate’ from package ‘stats’ in package ‘raster’ Creating a generic function for ‘as.array’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘as.vector’ from package ‘base’ in package ‘raster’ in method for ‘brick’ with signature ‘x="big.matrix"’: no definition for class “big.matrix” in method for ‘brick’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘brick’ with signature ‘x="grf"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"STFDF","RasterBrick"’: no definition for class “STFDF” in method for ‘coerce’ with signature ‘"STSDF","RasterBrick"’: no definition for class “STSDF” in method for ‘coerce’ with signature ‘"asc","RasterLayer"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"RasterLayer","asc"’: no definition for class “asc” in method for ‘coerce’ with signature ‘"kasc","RasterBrick"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kasc","RasterStack"’: no definition for class “kasc” in method for ‘coerce’ with signature ‘"kde","RasterLayer"’: no definition for class “kde” in method for ‘coerce’ with signature ‘"grf","RasterBrick"’: no definition for class “grf” in method for ‘coerce’ with signature ‘"grf","RasterLayer"’: no definition for class “grf” Creating a generic function for ‘nrow’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘hist’ from package ‘graphics’ in package ‘raster’ Creating a generic function for ‘mean’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘labels’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘print’ from package ‘base’ in package ‘raster’ Creating a generic function for ‘quantile’ from package ‘stats’ in package ‘raster’ in method for ‘raster’ with signature ‘x="big.matrix"’: no definition for class “big.matrix” in method for ‘raster’ with signature ‘x="kasc"’: no definition for class “kasc” in method for ‘raster’ with signature ‘x="asc"’: no definition for class “asc” in method for ‘raster’ with signature ‘x="kde"’: no definition for class “kde” in method for ‘raster’ with signature ‘x="grf"’: no definition for class “grf” Creating a generic function for ‘scale’ from package ‘base’ in package ‘raster’ in method for ‘stack’ with signature ‘x="kasc"’: no definition for class “kasc” ** help *** installing help indices converting help for package ‘raster’ finding HTML links ... done Arith-methods html Compare-methods html Extent-class html KML html Logic-methods html Math-methods html NAvalue html RGB html Raster-classes html Summary-methods html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/Summary-methods.Rd:22: missing file link ‘maxValue’ Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/Summary-methods.Rd:22: missing file link ‘minValue’ addLayer html adjacent html aggregate html alignExtent html animate html approxNA html area html as.data.frame html as.logical-methods html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/as.logical-methods.Rd:14: missing file link ‘as.logical’ as.matrix html as.raster html atan2 html autocor html bands html barplot html bind html blockSize html boundaries html boxplot html brick html buffer html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/buffer.Rd:35: missing file link ‘pointDistance’ calc html cellFrom html cellStats html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/cellStats.Rd:37: missing file link ‘minValue’ Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/cellStats.Rd:37: missing file link ‘maxValue’ cellsFromExtent html clamp html clearValues html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/clearValues.Rd:21: missing file link ‘values’ click html clump html cluster html compare html compareCRS html contour html coordinates html corLocal html cover html crop html crosstab html cut html cv html dataType html datasource html density html dimensions html direction html disaggregate html distance html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/distance.Rd:31: missing file link ‘pointDistance’ distanceFromPoints html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/distanceFromPoints.Rd:27: missing file link ‘pointDistance’ draw html drawExtent html erase html extend html extension html extent html extract html finding level-2 HTML links ... done extractIndex html extremeValues html factor html filename html filledContour html flip html flowpath html focal html focalWeight html freq html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/freq.Rd:23: missing file link ‘round’ gainoffset html getData html getValues html getValuesBlock html getValuesFocal html gridDistance html hdrFiles html headtail html hillShade html hist html image html iniFile html init html interpolate html intersect html isLonLat html layerStats html layerize html localFun html mask html match html merge html metadata html modal html mosaic html movingFun html names html ncell html nlayers html origin html overlay html pairs html persp html plot html plotRGB html pointdistance html predict html programming html projectRaster html projection html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/projection.Rd:31: missing file link ‘CRS’ properties html quantile html raster-package html raster html rasterFromCells html rasterFromXYZ html rasterOptions html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/rasterOptions.Rd:40: missing file link ‘canProcessInMemory’ rasterTmpFile html rasterToContour html rasterToPoints html rasterToPolygons html rasterize html readAll html reclassify html rectify html replacement html resample html resolution html rotate html rotated html round html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/round.Rd:44: missing file link ‘round’ roundExtent html rowFromCell html sampleInt html sampleRandom html sampleRegular html sampleStratified html saveStack html scale html scalebar html select html setExtent html setMinMax html setValues html shapefile html shift html slopeAspect html spEasy html spplot html stack html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/stack.Rd:49: missing file link ‘dropLayer’ stackApply html stackSelect html strech html subset html Rd warning: /tmp/Rtmpf2kTv7/R.INSTALL5bd15de809d5/raster/man/subset.Rd:34: missing file link ‘dropLayer’ substitute html summary html symdif html terrain html text html transpose html trim html union html unique html unstack html update html validCell html validNames html weighted.mean html which html which.minmax html writeFormats html writeRaster html writeValues html xyFromCell html zApply html zonal html zoom html zvalues html ** building package indices ** installing vignettes ** testing if installed package can be loaded Loading required package: MASS Loading required package: grDevices Loading required package: graphics Loading required package: stats Loading required package: utils Error : package ‘sp’ required by ‘raster’ could not be found Error: loading failed Execution halted ERROR: loading failed * removing ‘/home/rstudio-server/R/x86_64-redhat-linux-gnu-library/3.1/raster’ The downloaded source packages are in ‘/tmp/Rtmpi676Dm/downloaded_packages’ '/usr/lib64/R/bin/R' --vanilla CMD INSTALL '/tmp/Rtmpi676Dm/devtools59155d439194/rstudio-leaflet-5a056e3' \ --library='/home/rstudio-server/R/x86_64-redhat-linux-gnu-library/3.1' --install-tests ERROR: dependency ‘raster’ is not available for package ‘leaflet’ * removing ‘/home/rstudio-server/R/x86_64-redhat-linux-gnu-library/3.1/leaflet’ Error: Command failed (1) In addition: Warning message: In utils::install.packages(deps, dependencies = NA, Ncpus = threads) : installation of package ‘raster’ had non-zero exit status R> sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-redhat-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] datasets utils stats graphics grDevices methods base other attached packages: [1] sp_1.1-1 DT_0.0.38 httr_1.0.0 devtools_1.7.0 RJDBC_0.2-5 rJava_0.9-6 DBI_0.3.1 MASS_7.3-39 loaded via a namespace (and not attached): [1] curl_0.9 digest_0.6.4 grid_3.1.3 htmltools_0.2.6 htmlwidgets_0.3.3 lattice_0.20-30 [7] magrittr_1.5 R6_2.0.1 stringr_0.6.2 tools_3.1.3 R>