Found local metadata for linbox-1.4.2 Attempting to download package linbox-1.4.2.tar.gz from mirrors http://files.sagemath.org/spkg/upstream/linbox/linbox-1.4.2.tar.gz [......................................................................] linbox-1.4.2 ==================================================== Setting up build directory for linbox-1.4.2 Finished extraction Applying patches from ../patches... Applying ../patches/ticket-22318.patch patching file benchmarks/data/Makefile.in patching file benchmarks/Makefile.in patching file benchmarks/matrix/Makefile.in patching file configure patching file configure.ac patching file doc/Makefile.in patching file examples/Makefile.in patching file interfaces/driver/Makefile.am patching file interfaces/driver/Makefile.in patching file interfaces/kaapi/Makefile.in patching file interfaces/Makefile.in patching file interfaces/maple/Makefile.am patching file interfaces/maple/Makefile.in patching file interfaces/sage/Makefile.am patching file interfaces/sage/Makefile.in patching file linbox/algorithms/gauss/Makefile.in patching file linbox/algorithms/Makefile.in patching file linbox/algorithms/matrix-blas3/Makefile.in patching file linbox/algorithms/opencl-kernels/Makefile.in patching file linbox/algorithms/polynomial-matrix/Makefile.in patching file linbox/blackbox/Makefile.in patching file linbox/element/Makefile.in patching file linbox/field/Makefile.in patching file linbox/Makefile.in patching file linbox/matrix/densematrix/Makefile.in patching file linbox/matrix/Makefile.in patching file linbox/matrix/matrixdomain/Makefile.in patching file linbox/matrix/sliced3/Makefile.in patching file linbox/matrix/sparsematrix/Makefile.in patching file linbox/randiter/Makefile.in patching file linbox/ring/Makefile.in patching file linbox/ring/modular/Makefile.in patching file linbox/ring/ntl/Makefile.in patching file linbox/solutions/Makefile.in patching file linbox/util/formats/Makefile.in patching file linbox/util/Makefile.in patching file linbox/vector/Makefile.in patching file macros/Makefile.in patching file Makefile.in patching file tests/data/Makefile.in patching file tests/Makefile.in patching file tests/matrix/Makefile.in **************************************************** Host system: Linux vfjh9xzs8i 2.6.32-042stab120.20 #1 SMP Fri Mar 10 16:52:50 MSK 2017 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/home/luisjba/sc_build/sage/local/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/luisjba/sc_build/sage/local --with-local-prefix=/home/luisjba/sc_build/sage/local --with-gmp=/home/luisjba/sc_build/sage/local --with-mpfr=/home/luisjba/sc_build/sage/local --with-mpc=/home/luisjba/sc_build/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm Thread model: posix gcc version 5.4.0 (GCC) **************************************************** checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for rm... /bin/rm checking whether to enable maintainer-specific portions of Makefiles... no ----------------------------------------------- checking whether to enable debugging options in the library... no checking whether to enable profiling everything in the library... no checking whether to enable warnings when compiling the library... no ----------------------------------------------- checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for family name of compiler... gcc (GCC) 5.4.0 checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ----------------------------------------------- START LINBOX CONFIG ----------------------------------------------- ----------------------------------------------- checking enabling OpenMP... no ----------------------------------------------- checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for stdint.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking whether byte ordering is bigendian... no ----------------------------------------------- Default path = /home/luisjba/sc_build/sage/local /usr /usr/local checking whether to compile the drivers... no ----------------------------------------------- checking for pkg-config... /home/luisjba/sc_build/sage/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFLAS_FFPACK... yes checking for LAPACK in fflas-ffpack... ok checking for IML... found checking for M4RI... found checking for M4RIE... not found checking for MPFR... found checking for FPLLL >= 4.0.1... checking for FLINT... found checking for NTL >= 5.0... found checking whether to compile the SAGE interface... yes checking whether gnuplot works... no You must have gnuplot installed to create benchmark graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://www.gnuplot.info/download.html checking whether ps2pdf works... no You must have ps2pdf installed to create pdf benchmarks graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://pages.cs.wisc.edu/~ghost/ checking if tinyxml2 is available... no configure: WARNING: tinyxml2 is not installed (no import/export of benchmarks). checking whether to build documentation... no checking whether dot works... no checking for OpenCL >= 1.0... not found ----------------------------------------------- CXXFLAGS = -std=gnu++11 -g -fPIC LIBS = DEPS_CFLAGS = -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include DEPS_LIBS = -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp DEFAULT CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG TESTS CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG ----------------------------------------------- END LINBOX CONFIG ----------------------------------------------- checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating linbox-config config.status: creating examples/Makefile config.status: creating doc/Makefile config.status: creating linbox/Makefile config.status: creating linbox/algorithms/Makefile config.status: creating linbox/algorithms/gauss/Makefile config.status: creating linbox/algorithms/matrix-blas3/Makefile config.status: creating linbox/algorithms/opencl-kernels/Makefile config.status: creating linbox/algorithms/polynomial-matrix/Makefile config.status: creating linbox/blackbox/Makefile config.status: creating linbox/element/Makefile config.status: creating linbox/field/Makefile config.status: creating linbox/matrix/Makefile config.status: creating linbox/matrix/sparsematrix/Makefile config.status: creating linbox/matrix/densematrix/Makefile config.status: creating linbox/matrix/matrixdomain/Makefile config.status: creating linbox/matrix/sliced3/Makefile config.status: creating linbox/randiter/Makefile config.status: creating linbox/ring/Makefile config.status: creating linbox/ring/ntl/Makefile config.status: creating linbox/ring/modular/Makefile config.status: creating linbox/solutions/Makefile config.status: creating linbox/util/Makefile config.status: creating linbox/util/formats/Makefile config.status: creating linbox/vector/Makefile config.status: creating tests/Makefile config.status: creating tests/data/Makefile config.status: creating tests/matrix/Makefile config.status: creating interfaces/Makefile config.status: creating interfaces/driver/Makefile config.status: creating interfaces/maple/Makefile config.status: creating interfaces/kaapi/Makefile config.status: creating interfaces/sage/Makefile config.status: creating macros/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/data/Makefile config.status: creating benchmarks/matrix/Makefile config.status: creating linbox.pc config.status: creating config.h config.status: executing linbox/config.h commands config.status: creating linbox/config.h - prefix __LINBOX for config.h defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------- make[3]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' make all-recursive make[4]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Making all in linbox make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in util make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in formats make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o error.lo error.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c error.C -fPIC -DPIC -o .libs/error.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o debug.lo debug.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c debug.C -fPIC -DPIC -o .libs/debug.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libutil.la error.lo debug.lo libtool: link: ar cru .libs/libutil.a .libs/error.o .libs/debug.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in element make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' Making all in field make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' Making all in randiter make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o mersenne-twister.lo mersenne-twister.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c mersenne-twister.C -fPIC -DPIC -o .libs/mersenne-twister.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libranditer.la mersenne-twister.lo libtool: link: ar cru .libs/libranditer.a .libs/mersenne-twister.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libranditer.a libtool: link: ( cd ".libs" && rm -f "libranditer.la" && ln -s "../libranditer.la" "libranditer.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' Making all in vector make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in sparsematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' Making all in densematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' Making all in matrixdomain make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' Making all in sliced3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in blackbox make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' Making all in algorithms make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in gauss make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' Making all in opencl-kernels make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' Making all in matrix-blas3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' Making all in polynomial-matrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o diophantine-solver.lo diophantine-solver.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c diophantine-solver.C -fPIC -DPIC -o .libs/diophantine-solver.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libalgorithms.la diophantine-solver.lo libtool: link: ar cru .libs/libalgorithms.a .libs/diophantine-solver.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libalgorithms.a libtool: link: ( cd ".libs" && rm -f "libalgorithms.la" && ln -s "../libalgorithms.la" "libalgorithms.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in solutions make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' Making all in ring make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' Making all in ntl make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' Making all in modular make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o dummy.lo dummy.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c dummy.C -fPIC -DPIC -o .libs/dummy.o dummy.C:35:12: warning: 'dummy' defined but not used [-Wunused-variable] static int dummy; ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -no-undefined -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o liblinbox.la -rpath /home/luisjba/sc_build/sage/local/lib dummy.lo util/libutil.la randiter/libranditer.la algorithms/libalgorithms.la -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtbeginS.o .libs/dummy.o -Wl,--whole-archive util/.libs/libutil.a randiter/.libs/libranditer.a algorithms/.libs/libalgorithms.a -Wl,--no-whole-archive -L/home/luisjba/sc_build/sage/local/lib -lntl -lflint -lfflas -lffpack -lopenblas -lgivaro -lgmpxx -lgmp -lmpfr -liml -L/home/luisjba/sc_build/sage/local/lib/../lib64 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../../../lib64 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../.. -lstdc++ -lm -lc -lgcc_s /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-soname -Wl,liblinbox.so.0 -o .libs/liblinbox.so.0.0.0 libtool: link: (cd ".libs" && rm -f "liblinbox.so.0" && ln -s "liblinbox.so.0.0.0" "liblinbox.so.0") libtool: link: (cd ".libs" && rm -f "liblinbox.so" && ln -s "liblinbox.so.0.0.0" "liblinbox.so") libtool: link: ( cd ".libs" && rm -f "liblinbox.la" && ln -s "../liblinbox.la" "liblinbox.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in benchmarks make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o benchmark.lo benchmark.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c benchmark.C -fPIC -DPIC -o .libs/benchmark.o /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libbenchmarks.la benchmark.lo ../linbox/liblinbox.la libtool: link: ar cru .libs/libbenchmarks.a .libs/benchmark.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbenchmarks.a libtool: link: ( cd ".libs" && rm -f "libbenchmarks.la" && ln -s "../libbenchmarks.la" "libbenchmarks.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in macros make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' Making all in tests make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in interfaces make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Making all in driver make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' Making all in kaapi make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' Making all in maple make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' Making all in sage make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o linbox-sage.lo linbox-sage.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c linbox-sage.C -fPIC -DPIC -o .libs/linbox-sage.o g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. Makefile:506: recipe for target 'linbox-sage.lo' failed make[6]: *** [linbox-sage.lo] Error 1 make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' Makefile:429: recipe for target 'all-recursive' failed make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Makefile:583: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Makefile:454: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Error building LinBox. real 3m14.444s user 1m54.890s sys 0m11.150s ************************************************************************ Error installing package linbox-1.4.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/luisjba/sc_build/sage/logs/pkgs/linbox-1.4.2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2' && '/home/luisjba/sc_build/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for linbox-1.4.2 Using cached file /home/luisjba/sc_build/sage/upstream/linbox-1.4.2.tar.gz linbox-1.4.2 ==================================================== Moving old directory linbox-1.4.2 to /home/luisjba/sc_build/sage/local/var/tmp/sage/build/old... Setting up build directory for linbox-1.4.2 Finished extraction Applying patches from ../patches... Applying ../patches/ticket-22318.patch patching file benchmarks/data/Makefile.in patching file benchmarks/Makefile.in patching file benchmarks/matrix/Makefile.in patching file configure patching file configure.ac patching file doc/Makefile.in patching file examples/Makefile.in patching file interfaces/driver/Makefile.am patching file interfaces/driver/Makefile.in patching file interfaces/kaapi/Makefile.in patching file interfaces/Makefile.in patching file interfaces/maple/Makefile.am patching file interfaces/maple/Makefile.in patching file interfaces/sage/Makefile.am patching file interfaces/sage/Makefile.in patching file linbox/algorithms/gauss/Makefile.in patching file linbox/algorithms/Makefile.in patching file linbox/algorithms/matrix-blas3/Makefile.in patching file linbox/algorithms/opencl-kernels/Makefile.in patching file linbox/algorithms/polynomial-matrix/Makefile.in patching file linbox/blackbox/Makefile.in patching file linbox/element/Makefile.in patching file linbox/field/Makefile.in patching file linbox/Makefile.in patching file linbox/matrix/densematrix/Makefile.in patching file linbox/matrix/Makefile.in patching file linbox/matrix/matrixdomain/Makefile.in patching file linbox/matrix/sliced3/Makefile.in patching file linbox/matrix/sparsematrix/Makefile.in patching file linbox/randiter/Makefile.in patching file linbox/ring/Makefile.in patching file linbox/ring/modular/Makefile.in patching file linbox/ring/ntl/Makefile.in patching file linbox/solutions/Makefile.in patching file linbox/util/formats/Makefile.in patching file linbox/util/Makefile.in patching file linbox/vector/Makefile.in patching file macros/Makefile.in patching file Makefile.in patching file tests/data/Makefile.in patching file tests/Makefile.in patching file tests/matrix/Makefile.in **************************************************** Host system: Linux vfjh9xzs8i 2.6.32-042stab120.20 #1 SMP Fri Mar 10 16:52:50 MSK 2017 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/home/luisjba/sc_build/sage/local/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/luisjba/sc_build/sage/local --with-local-prefix=/home/luisjba/sc_build/sage/local --with-gmp=/home/luisjba/sc_build/sage/local --with-mpfr=/home/luisjba/sc_build/sage/local --with-mpc=/home/luisjba/sc_build/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm Thread model: posix gcc version 5.4.0 (GCC) **************************************************** checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for rm... /bin/rm checking whether to enable maintainer-specific portions of Makefiles... no ----------------------------------------------- checking whether to enable debugging options in the library... no checking whether to enable profiling everything in the library... no checking whether to enable warnings when compiling the library... no ----------------------------------------------- checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for family name of compiler... gcc (GCC) 5.4.0 checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ----------------------------------------------- START LINBOX CONFIG ----------------------------------------------- ----------------------------------------------- checking enabling OpenMP... no ----------------------------------------------- checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for stdint.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking whether byte ordering is bigendian... no ----------------------------------------------- Default path = /home/luisjba/sc_build/sage/local /usr /usr/local checking whether to compile the drivers... no ----------------------------------------------- checking for pkg-config... /home/luisjba/sc_build/sage/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFLAS_FFPACK... yes checking for LAPACK in fflas-ffpack... ok checking for IML... found checking for M4RI... found checking for M4RIE... not found checking for MPFR... found checking for FPLLL >= 4.0.1... checking for FLINT... found checking for NTL >= 5.0... found checking whether to compile the SAGE interface... yes checking whether gnuplot works... no You must have gnuplot installed to create benchmark graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://www.gnuplot.info/download.html checking whether ps2pdf works... no You must have ps2pdf installed to create pdf benchmarks graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://pages.cs.wisc.edu/~ghost/ checking if tinyxml2 is available... no configure: WARNING: tinyxml2 is not installed (no import/export of benchmarks). checking whether to build documentation... no checking whether dot works... no checking for OpenCL >= 1.0... not found ----------------------------------------------- CXXFLAGS = -std=gnu++11 -g -fPIC LIBS = DEPS_CFLAGS = -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include DEPS_LIBS = -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp DEFAULT CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG TESTS CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG ----------------------------------------------- END LINBOX CONFIG ----------------------------------------------- checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating linbox-config config.status: creating examples/Makefile config.status: creating doc/Makefile config.status: creating linbox/Makefile config.status: creating linbox/algorithms/Makefile config.status: creating linbox/algorithms/gauss/Makefile config.status: creating linbox/algorithms/matrix-blas3/Makefile config.status: creating linbox/algorithms/opencl-kernels/Makefile config.status: creating linbox/algorithms/polynomial-matrix/Makefile config.status: creating linbox/blackbox/Makefile config.status: creating linbox/element/Makefile config.status: creating linbox/field/Makefile config.status: creating linbox/matrix/Makefile config.status: creating linbox/matrix/sparsematrix/Makefile config.status: creating linbox/matrix/densematrix/Makefile config.status: creating linbox/matrix/matrixdomain/Makefile config.status: creating linbox/matrix/sliced3/Makefile config.status: creating linbox/randiter/Makefile config.status: creating linbox/ring/Makefile config.status: creating linbox/ring/ntl/Makefile config.status: creating linbox/ring/modular/Makefile config.status: creating linbox/solutions/Makefile config.status: creating linbox/util/Makefile config.status: creating linbox/util/formats/Makefile config.status: creating linbox/vector/Makefile config.status: creating tests/Makefile config.status: creating tests/data/Makefile config.status: creating tests/matrix/Makefile config.status: creating interfaces/Makefile config.status: creating interfaces/driver/Makefile config.status: creating interfaces/maple/Makefile config.status: creating interfaces/kaapi/Makefile config.status: creating interfaces/sage/Makefile config.status: creating macros/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/data/Makefile config.status: creating benchmarks/matrix/Makefile config.status: creating linbox.pc config.status: creating config.h config.status: executing linbox/config.h commands config.status: creating linbox/config.h - prefix __LINBOX for config.h defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------- make[3]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' make all-recursive make[4]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Making all in linbox make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in util make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in formats make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o error.lo error.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c error.C -fPIC -DPIC -o .libs/error.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o debug.lo debug.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c debug.C -fPIC -DPIC -o .libs/debug.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libutil.la error.lo debug.lo libtool: link: ar cru .libs/libutil.a .libs/error.o .libs/debug.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in element make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' Making all in field make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' Making all in randiter make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o mersenne-twister.lo mersenne-twister.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c mersenne-twister.C -fPIC -DPIC -o .libs/mersenne-twister.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libranditer.la mersenne-twister.lo libtool: link: ar cru .libs/libranditer.a .libs/mersenne-twister.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libranditer.a libtool: link: ( cd ".libs" && rm -f "libranditer.la" && ln -s "../libranditer.la" "libranditer.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' Making all in vector make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in sparsematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' Making all in densematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' Making all in matrixdomain make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' Making all in sliced3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in blackbox make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' Making all in algorithms make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in gauss make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' Making all in opencl-kernels make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' Making all in matrix-blas3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' Making all in polynomial-matrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o diophantine-solver.lo diophantine-solver.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c diophantine-solver.C -fPIC -DPIC -o .libs/diophantine-solver.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libalgorithms.la diophantine-solver.lo libtool: link: ar cru .libs/libalgorithms.a .libs/diophantine-solver.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libalgorithms.a libtool: link: ( cd ".libs" && rm -f "libalgorithms.la" && ln -s "../libalgorithms.la" "libalgorithms.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in solutions make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' Making all in ring make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' Making all in ntl make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' Making all in modular make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o dummy.lo dummy.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c dummy.C -fPIC -DPIC -o .libs/dummy.o dummy.C:35:12: warning: 'dummy' defined but not used [-Wunused-variable] static int dummy; ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -no-undefined -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o liblinbox.la -rpath /home/luisjba/sc_build/sage/local/lib dummy.lo util/libutil.la randiter/libranditer.la algorithms/libalgorithms.la -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtbeginS.o .libs/dummy.o -Wl,--whole-archive util/.libs/libutil.a randiter/.libs/libranditer.a algorithms/.libs/libalgorithms.a -Wl,--no-whole-archive -L/home/luisjba/sc_build/sage/local/lib -lntl -lflint -lfflas -lffpack -lopenblas -lgivaro -lgmpxx -lgmp -lmpfr -liml -L/home/luisjba/sc_build/sage/local/lib/../lib64 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../../../lib64 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../.. -lstdc++ -lm -lc -lgcc_s /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-soname -Wl,liblinbox.so.0 -o .libs/liblinbox.so.0.0.0 libtool: link: (cd ".libs" && rm -f "liblinbox.so.0" && ln -s "liblinbox.so.0.0.0" "liblinbox.so.0") libtool: link: (cd ".libs" && rm -f "liblinbox.so" && ln -s "liblinbox.so.0.0.0" "liblinbox.so") libtool: link: ( cd ".libs" && rm -f "liblinbox.la" && ln -s "../liblinbox.la" "liblinbox.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in benchmarks make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o benchmark.lo benchmark.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c benchmark.C -fPIC -DPIC -o .libs/benchmark.o /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libbenchmarks.la benchmark.lo ../linbox/liblinbox.la libtool: link: ar cru .libs/libbenchmarks.a .libs/benchmark.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbenchmarks.a libtool: link: ( cd ".libs" && rm -f "libbenchmarks.la" && ln -s "../libbenchmarks.la" "libbenchmarks.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in macros make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' Making all in tests make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in interfaces make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Making all in driver make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' Making all in kaapi make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' Making all in maple make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' Making all in sage make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o linbox-sage.lo linbox-sage.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c linbox-sage.C -fPIC -DPIC -o .libs/linbox-sage.o g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. Makefile:506: recipe for target 'linbox-sage.lo' failed make[6]: *** [linbox-sage.lo] Error 1 make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' Makefile:429: recipe for target 'all-recursive' failed make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Makefile:583: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Makefile:454: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Error building LinBox. real 2m48.234s user 1m52.341s sys 0m11.741s ************************************************************************ Error installing package linbox-1.4.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/luisjba/sc_build/sage/logs/pkgs/linbox-1.4.2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2' && '/home/luisjba/sc_build/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for linbox-1.4.2 Using cached file /home/luisjba/sc_build/sage/upstream/linbox-1.4.2.tar.gz linbox-1.4.2 ==================================================== Moving old directory linbox-1.4.2 to /home/luisjba/sc_build/sage/local/var/tmp/sage/build/old... Setting up build directory for linbox-1.4.2 Finished extraction Applying patches from ../patches... Applying ../patches/ticket-22318.patch patching file benchmarks/data/Makefile.in patching file benchmarks/Makefile.in patching file benchmarks/matrix/Makefile.in patching file configure patching file configure.ac patching file doc/Makefile.in patching file examples/Makefile.in patching file interfaces/driver/Makefile.am patching file interfaces/driver/Makefile.in patching file interfaces/kaapi/Makefile.in patching file interfaces/Makefile.in patching file interfaces/maple/Makefile.am patching file interfaces/maple/Makefile.in patching file interfaces/sage/Makefile.am patching file interfaces/sage/Makefile.in patching file linbox/algorithms/gauss/Makefile.in patching file linbox/algorithms/Makefile.in patching file linbox/algorithms/matrix-blas3/Makefile.in patching file linbox/algorithms/opencl-kernels/Makefile.in patching file linbox/algorithms/polynomial-matrix/Makefile.in patching file linbox/blackbox/Makefile.in patching file linbox/element/Makefile.in patching file linbox/field/Makefile.in patching file linbox/Makefile.in patching file linbox/matrix/densematrix/Makefile.in patching file linbox/matrix/Makefile.in patching file linbox/matrix/matrixdomain/Makefile.in patching file linbox/matrix/sliced3/Makefile.in patching file linbox/matrix/sparsematrix/Makefile.in patching file linbox/randiter/Makefile.in patching file linbox/ring/Makefile.in patching file linbox/ring/modular/Makefile.in patching file linbox/ring/ntl/Makefile.in patching file linbox/solutions/Makefile.in patching file linbox/util/formats/Makefile.in patching file linbox/util/Makefile.in patching file linbox/vector/Makefile.in patching file macros/Makefile.in patching file Makefile.in patching file tests/data/Makefile.in patching file tests/Makefile.in patching file tests/matrix/Makefile.in **************************************************** Host system: Linux vfjh9xzs8i 2.6.32-042stab120.20 #1 SMP Fri Mar 10 16:52:50 MSK 2017 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/home/luisjba/sc_build/sage/local/libexec/gcc/x86_64-unknown-linux-gnu/5.4.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../src/configure --prefix=/home/luisjba/sc_build/sage/local --with-local-prefix=/home/luisjba/sc_build/sage/local --with-gmp=/home/luisjba/sc_build/sage/local --with-mpfr=/home/luisjba/sc_build/sage/local --with-mpc=/home/luisjba/sc_build/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm Thread model: posix gcc version 5.4.0 (GCC) **************************************************** checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for rm... /bin/rm checking whether to enable maintainer-specific portions of Makefiles... no ----------------------------------------------- checking whether to enable debugging options in the library... no checking whether to enable profiling everything in the library... no checking whether to enable warnings when compiling the library... no ----------------------------------------------- checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for family name of compiler... gcc (GCC) 5.4.0 checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ----------------------------------------------- START LINBOX CONFIG ----------------------------------------------- ----------------------------------------------- checking enabling OpenMP... no ----------------------------------------------- checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for stdint.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking whether byte ordering is bigendian... no ----------------------------------------------- Default path = /home/luisjba/sc_build/sage/local /usr /usr/local checking whether to compile the drivers... no ----------------------------------------------- checking for pkg-config... /home/luisjba/sc_build/sage/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFLAS_FFPACK... yes checking for LAPACK in fflas-ffpack... ok checking for IML... found checking for M4RI... found checking for M4RIE... not found checking for MPFR... found checking for FPLLL >= 4.0.1... checking for FLINT... found checking for NTL >= 5.0... found checking whether to compile the SAGE interface... yes checking whether gnuplot works... no You must have gnuplot installed to create benchmark graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://www.gnuplot.info/download.html checking whether ps2pdf works... no You must have ps2pdf installed to create pdf benchmarks graphics for LinBox. Download the appropriate package for your distribution, or get the source tarball from http://pages.cs.wisc.edu/~ghost/ checking if tinyxml2 is available... no configure: WARNING: tinyxml2 is not installed (no import/export of benchmarks). checking whether to build documentation... no checking whether dot works... no checking for OpenCL >= 1.0... not found ----------------------------------------------- CXXFLAGS = -std=gnu++11 -g -fPIC LIBS = DEPS_CFLAGS = -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include DEPS_LIBS = -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp DEFAULT CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG TESTS CFLAGS = -O2 -Wall -g -DNDEBUG -U_LB_DEBUG ----------------------------------------------- END LINBOX CONFIG ----------------------------------------------- checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating linbox-config config.status: creating examples/Makefile config.status: creating doc/Makefile config.status: creating linbox/Makefile config.status: creating linbox/algorithms/Makefile config.status: creating linbox/algorithms/gauss/Makefile config.status: creating linbox/algorithms/matrix-blas3/Makefile config.status: creating linbox/algorithms/opencl-kernels/Makefile config.status: creating linbox/algorithms/polynomial-matrix/Makefile config.status: creating linbox/blackbox/Makefile config.status: creating linbox/element/Makefile config.status: creating linbox/field/Makefile config.status: creating linbox/matrix/Makefile config.status: creating linbox/matrix/sparsematrix/Makefile config.status: creating linbox/matrix/densematrix/Makefile config.status: creating linbox/matrix/matrixdomain/Makefile config.status: creating linbox/matrix/sliced3/Makefile config.status: creating linbox/randiter/Makefile config.status: creating linbox/ring/Makefile config.status: creating linbox/ring/ntl/Makefile config.status: creating linbox/ring/modular/Makefile config.status: creating linbox/solutions/Makefile config.status: creating linbox/util/Makefile config.status: creating linbox/util/formats/Makefile config.status: creating linbox/vector/Makefile config.status: creating tests/Makefile config.status: creating tests/data/Makefile config.status: creating tests/matrix/Makefile config.status: creating interfaces/Makefile config.status: creating interfaces/driver/Makefile config.status: creating interfaces/maple/Makefile config.status: creating interfaces/kaapi/Makefile config.status: creating interfaces/sage/Makefile config.status: creating macros/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/data/Makefile config.status: creating benchmarks/matrix/Makefile config.status: creating linbox.pc config.status: creating config.h config.status: executing linbox/config.h commands config.status: creating linbox/config.h - prefix __LINBOX for config.h defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------- make[3]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' make all-recursive make[4]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Making all in linbox make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in util make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in formats make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util/formats' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o error.lo error.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c error.C -fPIC -DPIC -o .libs/error.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o debug.lo debug.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c debug.C -fPIC -DPIC -o .libs/debug.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libutil.la error.lo debug.lo libtool: link: ar cru .libs/libutil.a .libs/error.o .libs/debug.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/util' Making all in element make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/element' Making all in field make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/field' Making all in randiter make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o mersenne-twister.lo mersenne-twister.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c mersenne-twister.C -fPIC -DPIC -o .libs/mersenne-twister.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libranditer.la mersenne-twister.lo libtool: link: ar cru .libs/libranditer.a .libs/mersenne-twister.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libranditer.a libtool: link: ( cd ".libs" && rm -f "libranditer.la" && ln -s "../libranditer.la" "libranditer.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/randiter' Making all in vector make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/vector' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in sparsematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sparsematrix' Making all in densematrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/densematrix' Making all in matrixdomain make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/matrixdomain' Making all in sliced3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix/sliced3' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/matrix' Making all in blackbox make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/blackbox' Making all in algorithms make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in gauss make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/gauss' Making all in opencl-kernels make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/opencl-kernels' Making all in matrix-blas3 make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/matrix-blas3' Making all in polynomial-matrix make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms/polynomial-matrix' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o diophantine-solver.lo diophantine-solver.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c diophantine-solver.C -fPIC -DPIC -o .libs/diophantine-solver.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libalgorithms.la diophantine-solver.lo libtool: link: ar cru .libs/libalgorithms.a .libs/diophantine-solver.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libalgorithms.a libtool: link: ( cd ".libs" && rm -f "libalgorithms.la" && ln -s "../libalgorithms.la" "libalgorithms.la" ) make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/algorithms' Making all in solutions make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/solutions' Making all in ring make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' Making all in ntl make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/ntl' Making all in modular make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Nothing to be done for 'all'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring/modular' make[7]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox/ring' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o dummy.lo dummy.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c dummy.C -fPIC -DPIC -o .libs/dummy.o dummy.C:35:12: warning: 'dummy' defined but not used [-Wunused-variable] static int dummy; ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -no-undefined -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o liblinbox.la -rpath /home/luisjba/sc_build/sage/local/lib dummy.lo util/libutil.la randiter/libranditer.la algorithms/libalgorithms.la -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtbeginS.o .libs/dummy.o -Wl,--whole-archive util/.libs/libutil.a randiter/.libs/libranditer.a algorithms/.libs/libalgorithms.a -Wl,--no-whole-archive -L/home/luisjba/sc_build/sage/local/lib -lntl -lflint -lfflas -lffpack -lopenblas -lgivaro -lgmpxx -lgmp -lmpfr -liml -L/home/luisjba/sc_build/sage/local/lib/../lib64 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0 -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../../../lib64 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/../../.. -lstdc++ -lm -lc -lgcc_s /home/luisjba/sc_build/sage/local/lib/gcc/x86_64-unknown-linux-gnu/5.4.0/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-rpath -Wl,/home/luisjba/sc_build/sage/local/lib -Wl,-soname -Wl,liblinbox.so.0 -o .libs/liblinbox.so.0.0.0 libtool: link: (cd ".libs" && rm -f "liblinbox.so.0" && ln -s "liblinbox.so.0.0.0" "liblinbox.so.0") libtool: link: (cd ".libs" && rm -f "liblinbox.so" && ln -s "liblinbox.so.0.0.0" "liblinbox.so") libtool: link: ( cd ".libs" && rm -f "liblinbox.la" && ln -s "../liblinbox.la" "liblinbox.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/linbox' Making all in benchmarks make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o benchmark.lo benchmark.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../linbox -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -DLinBoxSrcOnly -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c benchmark.C -fPIC -DPIC -o .libs/benchmark.o /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -fPIC -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -L/home/luisjba/sc_build/sage/local/lib -lntl -L/home/luisjba/sc_build/sage/local/lib -lmpfr -L/home/luisjba/sc_build/sage/local/lib -liml -L/home/luisjba/sc_build/sage/local/lib -lflint -lfflas -lffpack -lopenblas -lgivaro -L/home/luisjba/sc_build/sage/local/lib -lgmpxx -lgmp -L/home/luisjba/sc_build/sage/local/lib -Wl,-rpath,/home/luisjba/sc_build/sage/local/lib -o libbenchmarks.la benchmark.lo ../linbox/liblinbox.la libtool: link: ar cru .libs/libbenchmarks.a .libs/benchmark.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbenchmarks.a libtool: link: ( cd ".libs" && rm -f "libbenchmarks.la" && ln -s "../libbenchmarks.la" "libbenchmarks.la" ) make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/benchmarks' Making all in macros make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/macros' Making all in tests make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in data make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/data' Making all in matrix make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests/matrix' make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/tests' Making all in interfaces make[5]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Making all in driver make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/driver' Making all in kaapi make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/kaapi' Making all in maple make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/maple' Making all in sage make[6]: Entering directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c -o linbox-sage.lo linbox-sage.C libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DDISABLE_COMMENTATOR -I../../linbox -Wall -DNDEBUG -UFFLASFFPACK_DEBUG -D__FFLASFFPACK_HAVE_CBLAS -g -O2 -DFFLAS_COMPILED -DFFPACK_COMPILED -I/home/luisjba/sc_build/sage/local/include -fPIC -std=gnu++11 -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -mavx -mfpmath=sse -fabi-version=6 -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -I/home/luisjba/sc_build/sage/local/include -O2 -Wall -g -DNDEBUG -U_LB_DEBUG -DDISABLE_COMMENTATOR -std=gnu++11 -g -fPIC -c linbox-sage.C -fPIC -DPIC -o .libs/linbox-sage.o g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. Makefile:506: recipe for target 'linbox-sage.lo' failed make[6]: *** [linbox-sage.lo] Error 1 make[6]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces/sage' Makefile:429: recipe for target 'all-recursive' failed make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src/interfaces' Makefile:583: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Makefile:454: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2/src' Error building LinBox. real 2m40.542s user 1m53.073s sys 0m12.881s ************************************************************************ Error installing package linbox-1.4.2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/luisjba/sc_build/sage/logs/pkgs/linbox-1.4.2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/luisjba/sc_build/sage/local/var/tmp/sage/build/linbox-1.4.2' && '/home/luisjba/sc_build/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************