RAxML-NG v. 0.4.1 BETA released on 20.07.2017 by The Exelixis Lab.
Authors: Alexey Kozlov, Alexandros Stamatakis, Diego Darriba, Tomas Flouri, Benoit Morel.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

WARNING: This is a BETA release, please use at your own risk!

RAxML-NG was called as follows:

./raxml-ng --all --msa eboD_phycor2_test.fas --model LG4X+FO --tree pars{10} --bs-trees 200

Analysis options:
  run mode: ML tree search + bootstrapping
  start tree(s): parsimony (10)
  random seed: 1502182871
  tip-inner: ON
  pattern compression: ON
  branch lengths: ML estimate (linked)
  SIMD kernels: AVX2
  parallelization: PTHREADS (8 threads)

[00:00:00] Reading alignment from file: eboD_phycor2_test.fas
[00:00:00] Loaded alignment with 44 taxa and 333 sites

Alignment comprises 1 partitions and 250 patterns

Partition 0: noname
Model: LG4X+FO+R4
Alignment sites / patterns: 333 / 250
Gaps: 0.05 %
Invariant sites: 30.63 %


[00:00:00] Generating parsimony starting tree(s) with 44 taxa
[00:00:03] Data distribution: partitions/thread: 1-1, patterns/thread: 31-32

Starting ML tree search with 10 distinct starting trees

[00:01:43] ML tree search #1, logLikelihood: -11256.856587
[00:03:40] ML tree search #2, logLikelihood: -11239.180141
[00:05:52] ML tree search #3, logLikelihood: -11256.754829
[00:08:07] ML tree search #4, logLikelihood: -11256.858454
[00:10:03] ML tree search #5, logLikelihood: -11256.856457
[00:12:00] ML tree search #6, logLikelihood: -11256.750708
[00:14:07] ML tree search #7, logLikelihood: -11255.727981
[00:16:14] ML tree search #8, logLikelihood: -11256.753814
[00:18:34] ML tree search #9, logLikelihood: -11255.728754
[00:20:34] ML tree search #10, logLikelihood: -11256.858670

[00:20:34] ML tree search completed, best tree logLH: -11239.180141

[00:20:34] Starting bootstrapping analysis with 200 replicates.

[00:23:53] Bootstrap tree #1, logLikelihood: -10600.880278
[00:26:45] Bootstrap tree #2, logLikelihood: -12054.367126
[00:28:39] Bootstrap tree #3, logLikelihood: -11549.348246
[00:31:03] Bootstrap tree #4, logLikelihood: -11301.977838
[00:32:56] Bootstrap tree #5, logLikelihood: -11421.485884
[00:35:47] Bootstrap tree #6, logLikelihood: -10903.426757