Set reordering to id=[0] and name=[default] Process file[C:\Users\ssphc\AppData\Local\Temp\Rtmpo3xw9v\file253c21f211a/Model.ini] threads[2] max.threads[4] blas_threads[1] nested[2:1] inla_build... number of sections=[9] parse section=[0] name=[INLA.libR] type=[LIBR] inla_parse_libR... section[INLA.libR] R_HOME=[C:/PROGRA~1/R/R-3.6.3] parse section=[7] name=[INLA.Expert] type=[EXPERT] inla_parse_expert... section[INLA.Expert] disable.gaussian.check=[0] cpo.manual=[0] jp.file=[(null)] jp.model=[(null)] parse section=[1] name=[INLA.Model] type=[PROBLEM] inla_parse_problem... name=[INLA.Model] R-INLA version=[21.02.23] R-INLA build date=[Mon Feb 22 11:58:09 PM +03 2021] Build tag=[Version_21.02.23] openmp.strategy=[default] pardiso-library installed and working? = [no] smtp = [taucs] strategy = [default] store results in directory=[C:\Users\ssphc\AppData\Local\Temp\Rtmpo3xw9v\file253c21f211a/results.files] output: cpo=[0] po=[0] dic=[0] kld=[1] mlik=[1] q=[0] graph=[0] gdensity=[0] hyperparameters=[1] summary=[1] return.marginals=[1] nquantiles=[3] [ 0.025 0.5 0.975 ] ncdf=[0] [ ] parse section=[3] name=[Predictor] type=[PREDICTOR] inla_parse_predictor ... section=[Predictor] dir=[predictor] PRIOR->name=[loggamma] hyperid=[53001|Predictor] PRIOR->from_theta=[function (x) <>exp(x)] PRIOR->to_theta = [function (x) <>log(x)] PRIOR->PARAMETERS=[1, 1e-005] initialise log_precision[12] fixed=[1] user.scale=[1] vb.correct=[0] n=[1196] m=[1131] ndata=[1131] compute=[1] read offsets from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] read n=[4654] entries from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 0/2327 (idx,y) = (0, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 1/2327 (idx,y) = (1, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 2/2327 (idx,y) = (2, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 3/2327 (idx,y) = (3, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 4/2327 (idx,y) = (4, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 5/2327 (idx,y) = (5, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 6/2327 (idx,y) = (6, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 7/2327 (idx,y) = (7, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 8/2327 (idx,y) = (8, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c78df53cd] 9/2327 (idx,y) = (9, 0) read link.fitted.values from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] read n=[4654] entries from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 0/2327 (idx,y) = (0, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 1/2327 (idx,y) = (1, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 2/2327 (idx,y) = (2, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 3/2327 (idx,y) = (3, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 4/2327 (idx,y) = (4, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 5/2327 (idx,y) = (5, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 6/2327 (idx,y) = (6, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 7/2327 (idx,y) = (7, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 8/2327 (idx,y) = (8, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c11f1235e] 9/2327 (idx,y) = (9, 0) Aext=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c68e1a75] AextPrecision=[3.269e+006] output: summary=[1] return.marginals=[1] nquantiles=[3] [ 0.025 0.5 0.975 ] ncdf=[0] [ ] parse section=[2] name=[INLA.Data1] type=[DATA] inla_parse_data [section 1]... tag=[INLA.Data1] family=[GAUSSIAN] likelihood=[GAUSSIAN] file->name=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c2952fa2] file->name=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c4d064fb8] file->name=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c40542ea] read n=[3393] entries from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c2952fa2] mdata.nattributes = 0 0/1131 (idx,a,y,d) = (0, 1, 0.695644, 1) 1/1131 (idx,a,y,d) = (1, 1, 1.01885, 1) 2/1131 (idx,a,y,d) = (2, 1, 1.24415, 1) 3/1131 (idx,a,y,d) = (3, 1, 1.83258, 1) 4/1131 (idx,a,y,d) = (4, 1, 2.03471, 1) 5/1131 (idx,a,y,d) = (5, 1, 1.95303, 1) 6/1131 (idx,a,y,d) = (6, 1, 2.06686, 1) 7/1131 (idx,a,y,d) = (7, 1, 2.07065, 1) 8/1131 (idx,a,y,d) = (8, 1, 1.83258, 1) 9/1131 (idx,a,y,d) = (9, 1, 2.12585, 1) likelihood.variant=[0] initialise log_precision[4] fixed0=[0] PRIOR0->name=[pcprec] hyperid=[65001|INLA.Data1] PRIOR0->from_theta=[function (x) <>exp(x)] PRIOR0->to_theta = [function (x) <>log(x)] PRIOR0->PARAMETERS0=[1.5 0.1] initialise log_precision offset[72.0873] fixed1=[1] PRIOR1->name=[none] hyperid=[65002|INLA.Data1] PRIOR1->from_theta=[function (x) <>exp(x)] PRIOR1->to_theta = [function (x) <>log(x)] PRIOR1->PARAMETERS1=[] Link model [IDENTITY] Link order [-1] Link variant [-1] Link a [1] Link ntheta [0] mix.use[0] parse section=[5] name=[s] type=[FFIELD] inla_parse_ffield... section=[s] dir=[random.effect00000001] model=[rgeneric] vb.correct=[-1] correct=[-1] constr=[0] diagonal=[0] id.names= compute=[1] nrep=[1] ngroup=[12] read covariates from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] read n=[2392] entries from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 0/1196 (idx,y) = (0, -1) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 1/1196 (idx,y) = (1, 26) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 2/1196 (idx,y) = (2, 27) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 3/1196 (idx,y) = (3, 1128) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 4/1196 (idx,y) = (4, 1189) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 5/1196 (idx,y) = (5, 1196) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 6/1196 (idx,y) = (6, 1198) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 7/1196 (idx,y) = (7, 3563) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 8/1196 (idx,y) = (8, 3564) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1c7360e6] 9/1196 (idx,y) = (9, 3565) file for locations=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c1ff8353d] nlocations=[6422] locations[0]=[1] locations[1]=[2] locations[2]=[3] locations[3]=[4] locations[4]=[5] locations[5]=[6] locations[6]=[7] locations[7]=[8] locations[8]=[9] locations[9]=[10] cyclic=[0] rgeneric.file [C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c132a74c1] rgeneric.model [.inla.rgeneric.model.s] Warning message: In options(stringsAsFactors = TRUE) : 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled Loading required package: Matrix Loading required package: foreach Loading required package: parallel Loading required package: sp This is INLA_21.02.23 built 2021-03-16 19:21:59 UTC. - See www.r-inla.org/contact-us for how to get help. - Save 379.7Mb of storage running 'inla.prune()' ntheta = [2] initial[0] = 0 initial[1] = 0 initialise theta[0]=[0] fixed[0]=[0] initialise theta[1]=[0] fixed[1]=[0] computed/guessed rank-deficiency = [0] output: summary=[1] return.marginals=[1] nquantiles=[3] [ 0.025 0.5 0.975 ] ncdf=[0] [ ] group.model = ar1 group.graph = group.cyclic = False group.order = -1 initialise group_rho_intern[2] group.fixed=[0] GROUP.PRIOR->name=[pccor1] hyperid=[41001|s] GROUP.PRIOR->from_theta=[function (x) <>2 * exp(x)/(1 + exp(x)) - 1] GROUP.PRIOR->to_theta = [function (x) <>log((1 + x)/(1 - x))] GROUP.PRIOR->GROUP.PARAMETERS=[0 0.9] section=[4] name=[m] type=[LINEAR] inla_parse_linear... section[m] dir=[fixed.effect00000001] file for covariates=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] read n=[2392] entries from file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 0/1196 (idx,y) = (0, 1) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 1/1196 (idx,y) = (1, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 2/1196 (idx,y) = (2, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 3/1196 (idx,y) = (3, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 4/1196 (idx,y) = (4, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 5/1196 (idx,y) = (5, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 6/1196 (idx,y) = (6, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 7/1196 (idx,y) = (7, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 8/1196 (idx,y) = (8, 0) file=[C:/Users/ssphc/AppData/Local/Temp/Rtmpo3xw9v/file253c21f211a/data.files/file253c77077a5] 9/1196 (idx,y) = (9, 0) prior mean=[0] prior precision=[0.001] compute=[1] output: summary=[1] return.marginals=[1] nquantiles=[3] [ 0.025 0.5 0.975 ] ncdf=[0] [ ] parse section=[8] name=[INLA.pardiso] type=[PARDISO] inla_parse_pardiso... section[INLA.pardiso] verbose[0] debug[0] parallel.reordering[1] nrhs[-1] Index table: number of entries[4], total length[79392] tag start-index length APredictor 0 1131 Predictor 1131 1196 s 2327 77064 m 79391 1 parse section=[6] name=[INLA.Parameters] type=[INLA] inla_parse_INLA... section[INLA.Parameters] lincomb.Error in inla.inlaprogram.has.crashed() : The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully. If this does not help, please contact the developers at .