Input data and parameters
Input
| Analysis date: | Mon Apr 27 15:32:24 CEST 2015 |
| BAM file: | subsample.bam |
| Counting algorithm: | uniquely-mapped-reads |
| GTF file: | rn6.refFlat.gtf |
| Paired-end sequencing: | no |
| Protocol: | non-strand-specific |
| Sorting performed: | no |
Summary
Reads alignment
| Number of mapped reads: | 91,009 |
| Total number of alignments: | 91,009 |
| Number of secondary alignments: | 0 |
| Number of non-unique alignments: | 0 |
| Aligned to genes: | 18,491 |
| Ambiguous alignments: | 11,325 |
| No feature assigned: | 60,192 |
| Not aligned: | 909 |
Reads genomic origin
| Exonic: | 18,491 / 23.5% |
| Intronic: | 16,639 / 21.15% |
| Intergenic: | 43,553 / 55.35% |
Transcript coverage profile
| 5' bias: | 0.45 |
| 3' bias: | 0.31 |
| 5'-3' bias: | 1.55 |
Junction analysis
| Reads at junctions: | 0 |
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