System information ================== Platform: linux2 Python version: 2.7.13 |Continuum Analytics, Inc.| (default, Dec 20 2016, 23:09:15) [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] Python executable: /home/jacob/anaconda3/envs/qiime1b/bin/python QIIME default reference information =================================== For details on what files are used as QIIME's default references, see here: https://github.com/biocore/qiime-default-reference/releases/tag/0.1.3 Dependency versions =================== QIIME library version: 1.9.1 QIIME script version: 1.9.1 qiime-default-reference version: 0.1.3 NumPy version: 1.13.0 SciPy version: 0.19.0 pandas version: 0.20.2 matplotlib version: 2.0.2 biom-format version: 2.1.5 h5py version: 2.6.0 (HDF5 version: 1.8.16) qcli version: 0.1.1 pyqi version: 0.3.2 scikit-bio version: 0.2.3 PyNAST version: 1.2.2 Emperor version: 0.9.51 burrito version: 0.9.1 burrito-fillings version: 0.1.1 sortmerna version: SortMeRNA version 2.0, 29/11/2014 sumaclust version: SUMACLUST Version 1.0.00 swarm version: Swarm 1.2.19 [Mar 5 2016 16:56:02] gdata: Installed. QIIME config values =================== For definitions of these settings and to learn how to configure QIIME, see here: http://qiime.org/install/qiime_config.html http://qiime.org/tutorials/parallel_qiime.html blastmat_dir: None pick_otus_reference_seqs_fp: /home/jacob/anaconda3/envs/qiime1b/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta sc_queue: all.q topiaryexplorer_project_dir: None pynast_template_alignment_fp: /home/jacob/anaconda3/envs/qiime1b/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta cluster_jobs_fp: start_parallel_jobs.py pynast_template_alignment_blastdb: None assign_taxonomy_reference_seqs_fp: /home/jacob/anaconda3/envs/qiime1b/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta torque_queue: friendlyq jobs_to_start: 1 slurm_time: None denoiser_min_per_core: 50 assign_taxonomy_id_to_taxonomy_fp: /home/jacob/anaconda3/envs/qiime1b/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt temp_dir: /tmp/ slurm_memory: None slurm_queue: None blastall_fp: blastall seconds_to_sleep: 1 QIIME base install test results =============================== ......... ---------------------------------------------------------------------- Ran 9 tests in 0.030s OK